Table 1.

Summary of complete chloroplast genomes of Ilex species included in the present study. PCG indicates protein-coding gene

Taxon	Accession number	Gene number				Length (bp)				GC(%)	AT(%)
		PCG	tRNA	rRNA	Full	Plastome	LSC	IRA/IRB	SSC
Ilex asprella	NC_045274	94	37	8	139	157,856	87,265	26,075	18,441	37.62	62.38
I. asprella var. tapuensis	MT767004	87	37	8	132	157,671	87,161	26,065	18,380	37.65	62.35
I. championii	MT764248	87	37	8	132	157,468	86,878	26,074	18,442	37.64	62.36
I. chapaensis	MT764251	87	37	8	132	157,665	87,155	26,065	18,380	37.65	62.35
I. cinerea	MT764247	87	37	8	132	157,215	86,601	26,094	18,426	37.69	62.31
I. cornuta	MT764252	87	37	8	132	157,216	86,607	26,091	18,427	37.69	62.31
I. crenata	MW528027	88	38	8	134	157,988	87,414	26,076	18,422	37.65	62.35
I. dabieshanensis	MT435529	90	37	8	135	157,218	86,723	26,034	18,427	37.69	62.31
I. dasyphylla	This study	92	40	8	140	158,009	87,388	26,105	18,411	37.62	62.38
I. dasyphylla	MT764253	87	37	8	132	158,009	87,388	26,105	18,411	37.62	62.38
I. delavayi	KX426470	95	40	8	143	157,671	87,077	26,078	18,438	37.65	62.35
I. dumosa	KP016927	86	37	8	131	157,732	87,033	26,087	18,415	37.62	62.27
I. ficoidea	MT764243	87	37	8	132	157,536	86,922	26,094	18,426	37.64	62.36
I. fukienensis	This study	91	40	8	139	157,474	86,886	26,074	18,440	37.64	62.36
I. graciliflora	MT764249	87	37	8	132	157,119	86,506	26,093	18,427	37.61	62.39
I. hanceana	MT764246	87	37	8	132	157,478	86,889	26,074	18,441	37.63	62.37
I. integra	NC_044417	86	37	8	131	157,548	86,936	26,093	18,426	37.64	62.36
I. intermedia	MT471320	89	37	8	134	157,577	87,083	26,034	18,426	37.63	62.37
I. kwangtungensis	MT764241	87	37	8	132	158,020	87,400	26,104	18,412	37.62	62.38
I. lancilimba	MT767005	87	37	8	132	157,998	87,382	26,105	18,406	37.62	62.38
I. latifolia	NC_047291	95	40	8	143	157,601	87,020	26,077	18,427	37.63	62.37
I. lohfauensis	This study	91	40	8	139	157,464	86,875	26,071	18,447	37.64	62.36
I. lohfauensis	MT764240	87	37	8	132	157,470	86,873	26,078	18,441	37.64	62.36
I. memecylifolia	MT764250	87	37	8	132	157,842	87,249	26,076	18,441	37.62	62.38
I. micrococca	MN830251	89	37	8	134	157,782	87,200	26,074	18,434	37.64	62.36
I. paraguariensis	NC_031207	86	37	8	131	157,614	87,154	26,076	18,308	37.63	62.35
I. polyneura	KX426468	95	40	8	143	157,621	87,140	26,061, 25,980	18,434	37.60	62.40
I. pubescens	KX426467	95	40	8	143	157,741	87,143	26,081	18,436	37.61	62.39
I. purpurea	MT471318	89	37	8	134	157,885	87,289	26,104	18,388	37.62	62.38
I. rotunda	MW292559	88	37	8	133	157,743	87,069	26,121	18,432	37.62	62.38
I. sp.	KX426469	95	40	8	143	157,611	87,137	26,020	18,434	37.62	62.38
I. suaveolens	MN830249	89	37	8	134	157,857	87,255	26,102	18,398	37.65	62.35
I. szechwanensis	KX426466	95	40	8	143	157,822	87,281	26,053	18,435	37.65	62.35
I. triflora	MT764242	87	36	8	131	157,706	87,183	26,065	18,393	37.67	62.33
I. venusta	This study	91	40	8	139	157,860	87,290	26,079	18,412	37.66	62.34
I. viridis	This study	91	40	8	139	157,673	87,150	26,065	18,393	37.68	62.32
I. viridis	MN830250	89	37	8	134	157,701	87,177	26,065	18,394	37.67	62.33
I. vomitoria	MT471319	90	36	8	134	157,328	86,920	26,005	18,398	37.66	62.34
I. wilsonii	KX426471	95	40	8	143	157,918	87,341	26,073	18,431	37.62	62.38
I. yunnanensis	This study	91	40	8	139	157,833	87,389	26,108	18,228	37.65	62.35
I. zhejiangensis	This study	91	40	8	139	157,182	86,575	26,092	18,423	37.69	62.31