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Whole genome-based phylogenetic of UPEC-46 and reference E. coli strains. The maximum-likelihood phylogenetic tree was constructed with 1,000 bootstrap replicates. The tree was visualized with iTOL and E. coli pathotypes or E. coli groups are indicated by colors. ST numbers from the MLST analysis for each strain are given in parentheses and phylogroups appointed. The UPEC-46 strain is indicated by a black arrow. E. fergusonii serves as an outgroup
