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Phylogenomic tree of 588 genomes of K. oxytoca complex and distribution of virulence factors. The core genes of the K. oxytoca complex (n = 588) were identified and concatenated using PIRATE v.1.0.4 (13) with default settings, followed by the phylogenetic tree inference using IQ-TREE v2.1.3 (39) under GTR+G+ASC model with a 1,000-bootstrap test. Tree was then visualized and annotated using web-based tools Phandango v1.3.0 (40) and iTOL v6.4.2 (41).
