TABLE 2.
Classes and repeat variable diresidue (RVD) sequences of transcription activator-like effectors (TALEs) found in the X. translucens pathotype strains.
| TALE classa | Strain | RVD sequence | Chromosome position (location:strand) |
| TalCT | CFBP 2055 | HN-HD-HD-HD-NI-NI-NI-HN-HD-HD-NN-NN-NI-NN-HD | 1,324,426–1,327,651:1 |
| CFBP 2539 | NN-HD-HD-HD-NI-NI-NI-HN-HD-HD-NN-NN-NI-NN-HD | 1,325,514–1,328,739:1 | |
| DSM 18974 | NN-HD-HD-HD-NI-NI-NI-NN-HD-HD-NN-NN-NI-NN-HD | 671,336–674,561:1 | |
| UPB458 | NN-HD-HD-HD-NI-NI-NI-NN-HD-HD-NN-NN-NI-NN-HD | 3,936,481–3,939,712:-1 | |
| TalCU | DSM 18974 | NG-HD-HD-HN-NG-NI-HG-HG-HD-ND-NN-NN-NI-NH-QD | 3,565,727–3,568,955:-1 |
| TalCV | DSM 18974 | NG-NN-HD-HD-NN-NI-HG-HD-ND-HG-NI-NN-HD | 3,562,396–3,565,408:-1 |
| UPB458 | NG-NN-HD-HD-NN-NI-HG-HD-ND-HG-NI-NN-HD | 1,087,442–1,090,460:1 | |
| TalCW | DSM 18974 | NN-NI-HN-HD-NI-NH-NG-HN-HD-HD-HD-NI-QD | 660,311–663,329:1 |
| TalCX | CFBP 8304 | NN-HD-NG-NN-HN-KG-NI-HD-NI-NK-HD-HD-HD-HD-NI-HN-NH-HD-QD | 674,110–677,491:1 |
| DSM 18974 | NN-HD-NG-NI-HN-KG-NI-HD-NI-NH-NG-NN-HD-HD-NI-NN-NI-HD-QD | 663,647–667,295:1 | |
| UPB458 | NN-QD-NG-NN-HN-KG-NI-HD-NI-NH-NG-HN-HD-HD-NI-NN-HD | 3,939,840–3,943,281:-1 | |
| TalCY | DSM 18974 | NI-NG-HN-NN-HD-NG-ND-NK-QD-NH-QD | 668,858–671,207:1 |
| TalCZ | CFBP 2055 | NH-NN-HD-NN-HD-NH-HD-YK-NG-NH-Y*-HD-NN-NI-NG-QD | 1,916,521–1,919,857:-1 |
| CFBP 2539 | NH-NN-HD-NN-HD-NH-HD-YK-NG-NH-Y*-HD-NN-NI-NG-QD | 1,917,023–1,920,359:-1 | |
| DSM 18974 | NH-NN-HD-NN-HD-NH-HD-YK-NG-NH-Y*-HD-NN-NI-NG-QD | 1,995,271–1,998,607:-1 | |
| TalDA | CFBP 2055 | HD-YD-NI-NG-NG-NN-YK-NG-HD-NG-NG-ND-NG-QD-NH-HD | 593,184–596,364:1 |
| CFBP 2539 | HD-YD-NI-NG-NG-NN-YK-NG-HD-NG-NG-ND-NG-QD-NH-HD | 594,296–597,476:1 | |
| CFBP 8304 | HD-YD-NI-NG-NG-NN-YK-NG-HD-NG-NG-ND-NK-QD-NH-QD | 653,260–656,587:1 | |
| DSM 18974 | NN-HD-NG-NG-NG-NN-YK-NG-HD-NG-NG-ND-NG-HD-NH-HD | 627,243–630,573:1 | |
| ICMP 16317 | HD-YD-NI-NG-NG-NN-YK-NG-HD-NG-NG-ND-NG-QD-NH-HD | 586,137–589,323:1 | |
| UPB458 | NN-HD-NG-NG-NG-NN-YK-NG-HD-NG-NG-ND-NG-HD-NH-HD | 4,001,560–4,004,884:-1 | |
| TalDC | CFBP 2055 | NN-NG-HD-HD-HD-KG-NN-Y*-NG-HD-HD-QD-HN | 1,321,073–1,324,088:1 |
| TalDD | CFBP 2055 | NN-HD-NG-NN-HN-KG-NI-HD-NI-NN-HD-HN-HD-HD-NI-HN-HD-QD | 612,552–616,092:1 |
| CFBP 2539 | NN-HD-NG-NN-HN-KG-NI-HD-NI-NN-HD-HN-HD-HD-NI-HN-HD-QD | 613,664–617,204:1 | |
| CFBP 2539 | NN-HD-NG-NN-HN-KG-NI-HD-NI-NN-HD-HD-NN-NN-NI-HN-HD | 1,321,735–1,325,176:1 | |
| TalDE | CFBP 2539 | NN-HD-NG-NN-HN-HN-NI-NI-NI-NH-NN-HD-NN-NH-HD-HD | 1,717,212–1,720,551:1 |
| CFBP 2055 | NN-HD-NG-NN-HN-HN-NI-NI-NI-NH-NN-HD-NN-NH-HD-HD | 1,716,713–1,720,052:1 | |
| TalDF | CFBP 2055 | HD-HN-HN-HD-NH-NH-HG-HD-ND-NN-Y*-NG-HD-NI-NH-NG-HD-HN | 1,711,799–1,715,336:1 |
| CFBP 2539 | HD-HN-HN-HD-NH-NH-HG-HD-KG-NN-Y*-NG-HD-NI-NH-NG-HD-HN | 1,712,298–1,715,835:1 | |
| TalDO | CFBP 2541 | NN-NN-KI-NN-HD-NG-HD-NG-NG-NK-HD-HD-NN-QD-NG-QD | 2,549,947–2,553,289:1 |
| TalDP | CFBP 2541 | NS-KI-NI-HD-NK-GI-HD-NK-HD-NN-HD-NK | 590,471–593,369:1 |
| TalJU | LMG 843 | NS-NG-HD-HD-NN | 1,670,023–1,673,728:-1 |
| TalJS | LMG 727 | NN-NG-NN-NG-HD-NK-NG-NI-DD-NK-HD-NG-NN-NI-NG-NN-HD-HD-QD | 3,139,389–3,143,094:1 |
| LMG 843 | NN-NG-NN-NG-HD-NK-NG-NK-DD-NK-DD-NG-NN-NI-NG-NN-HD-HD-QD | 2,289,805–2,292,265:1 | |
| TalIY | UPB 458 | NI-NG-HN-NK-HD-NH-HN-HD-HD-HD-HD-QD | 1,816,261–1,819,174:-1 |
| TalJB | CFBP 8304 | NH-NN-HE-NK-HD-NK-HD-YK-NG-NH-Y*-HE-NI-NI-NG-QD | 1,986,200–1,989,539:-1 |
| TalJT | LMG 730 | NN-NN-HK-HK-HD-HN-HD-NN | 2,152,104–2,154,627:1 |
| TalJV | LMG 728 | NN-NI-HD-HD-HD-HD-KT-NG-NN-NN-KT-NI-NN-HD-NG-NG-NN-HD-NK | 2,784,954–2,788,575:-1 |
| TalJW | LMG 728 | HK-HD-HN-NI-NG-HD-HN-NI-NG-HD-NG-NN-HN-HD-NG-NN-NI-HD-NG-NN-HD-HD-QD | 2,798,245–2,802,361:-1 |
| TalJX | LMG 728 | NK-NG-NI-HD-NG-NN-NG-HD-NK-N*-NK-HD-NN-HD-NG-NN-NI-NG-HD-HD-NN-HD-HD-NN-HD-HD-QD | 1,903,396–1,907,938:-1 |
| Pseudo TALE | LMG 727 | NI-NN | 2,236,495–2,238,688:1 |
aTALE classes based on AnnoTALE (Grau et al., 2016).
*Thirteenth residue is missing.