TABLE 2.
The number of isolates per genera selected for hybrid assembly using Unicycler (v0.4.7 and v0.4.9).
| Isolates |
Complete chromosome |
||
| Species | n = | Original hybrid | New hybrid |
| Acinetobacter | 7 | 4 | 5 |
| Burkholderia | 2 | 2 | 2 |
| Enterobacter | 4 | 3 | 3 |
| Escherichia | 8 | 4 | 6 |
| Klebsiella | 13 | 8 | 9 |
| Morganella | 1 | 0 | 0 |
| Mycoplasma | 2 | 1 | 1 |
| Pseudomonas | 5 | 3 | 3 |
| Salmonella | 3 | 2 | 2 |
| Serratia | 3 | 2 | 2 |
| Staphylococci | 5 | 2 | 2 |
| Streptococci | 6 | 3 | 3 |
| Ureaplasma | 3 | 3 | 3 |
| Total | 62 | 37 | 41 |
The original hybrid assembly uses the original basecalled fastq and the new hybrid genome was generated using Guppy v5.0.11 basecalled reads (from the same fast5 data).