Table 2.
Genotypes for polymorphisms in the trnK-matK-trnK region (2233–4337 bp)
| Sample name | trnK-matK-trnK INDEL (GAATAC) | trnK-matK-trnK SNP (C/T) | SNPa (T/C) | SNPa (A/C) | trnK-matK-trnK STR1 (A) | trnK-matK-trnK STR2 (T) |
|---|---|---|---|---|---|---|
| Start location (bp) | 2984 | 3258 | 3561 | 3752 | 3809 | 4109 |
| Yoruba Nigeria (NC_027223.1) | Absent | C | T | A | 11 | 10 |
| H2-4 | Absent | C | T | A | 11 | 10 |
| H3-3 | Absent | C | T | A | 11 | 10 |
| H5-4 | Present | C | T | A | 11 | 10 |
| NT H5-1 | Absent | C | T | A | 11 | 10 |
| NT H5-2 | Present | C | T | A | 11 | 10 |
| NT H5-4 | Present | C | C | C | 15 | 9 |
| H8-1 | Present | C | T | A | 11 | 10 |
| 10-A1 | Present | C | T | A | 11 | 10 |
| 12-A7 | Present | C | T | A | 11 | 10 |
| 16-B1 | Present | C | C | C | 13 | 9 |
| 21-A16 | Present | C | T | A | 11 | 10 |
| 35 | Present | C | C | C | 15 | 9 |
| 41 | Present | C | C | C | 14 | 9 |
| MedMJ10 | Present | C | T | A | 11 | 10 |
Italics indicate polymorphisms not analyzed previously by CE
a Indicates new polymorphisms discovered in this study