Table 3.
Genotypes for polymorphisms in the rps16 region (4803–6201 bp)
| Sample name | INDELa (AAAGTA) | trnK-rps16 hSTR (A) | rps16 SNP1 (A/G) | rps16 SNP2 (A/C) | rps16 hSTR (C) | rps16 SNP3 (G/A) |
|---|---|---|---|---|---|---|
| Start location (bp) | 4911 | 5197 | 5303 | 5517 | 5518 | 6103 |
| Yoruba Nigeria (NC_027223.1) | Absent | 9 | A | A | 12 | G |
| H2-4 | Absent | 9 | A | A | 11 | G |
| H3-3 | Absent | 9 | A | A | 11 | G |
| H5-4 | Absent | 10 | A | A | 11 | A |
| NT H5-1 | Absent | 9 | A | A | 11 | G |
| NT H5-2 | Absent | 10 | A | A | 11 | A |
| NT H5-4 | Present | 11 | A | A | 13 | G |
| H8-1 | Absent | 10 | A | A | 11 | A |
| 10-A1 | Absent | 10 | A | A | 11 | A |
| 12-A7 | Absent | 10 | A | A | 11 | A |
| 16-B1 | Present | 11 | A | A | 14 | G |
| 21-A16 | Absent | 10 | A | A | 11 | A |
| 35 | Present | 11 | A | A | 13 | G |
| 41 | Present | 11 | A | A | 14 | G |
| MedMJ10 | Absent | 10 | A | A | 11 | A |
Italics indicate polymorphisms not analyzed previously by CE
a Indicates new polymorphisms discovered in this study