TABLE 3.

Various GO terms and pathways related to rumen development shown from different modules.

GO term/pathway	ID	Gene	Module
Cell division	GO: 0051301	CCNB1, CCNB2	Lightgreen
Mitochondrial matrix	GO: 0005759	BDH1	Darkred
Mitochondrial inner membrane	GO: 0005743	HMGCL, HMGCS2, ACAT1	Darkred, lightgreen
Histone acetyltransferase complex	GO:0000123	CREBBP	Turquoise
Histone acetyltransferase activity	GO:0004402	CREBBP	Turquoise
Positive regulation of MAPK cascade	GO: 0043410	IGF2	Cyan
Regulation of multicellular organism growth	GO: 0040014	IGF1	Cyan
Positive regulation of phosphatidylinositol 3-kinase signaling	GO: 0014068	IGF1	Cyan
Cell cycle	bta04110	CCNB1, CCNB2, CREBBP	Lightgreen
Butanoate metabolism	bta00650	HMGCL, BDH1, ACAT1, HMGCS2	Darkred, lightgreen
Wnt signaling pathway	bta04310	CREBBP	Turquoise
MAPK signaling pathway	bta04010	IGF1, IGF2	Cyan
Synthesis and degradation of ketone bodies	bta00072	HMGCL, BDH1, ACAT1, HMGCS2	Darkred, lightgreen
PI3K-Akt signaling pathway	bta04151	IGF1, IGF2	Cyan
TGF-beta signaling pathway	bta04350	CREBBP	Turquoise