Antibodies |
Please see a detailed list of antibodies used in Table S1 |
|
|
Deposited data |
Single cell imaging data |
This study |
http://doi.org/10.5281/zenodo.4525425. |
Experimental models: Cell lines |
Retinal pigment epithelial cells (hTERT-RPE-1) |
ATCC |
CRL-4000 |
Human pancreatic epithelial cells (hTERT-HPNE) |
ATCC |
CRL-4023 |
RPE-PCNA-mTurqoise2 |
Laboratory of Jeremy Purvis |
(Chao et al., 2019) |
RPE-p21-mTq2/cycD1-mVenus/DHB-mCherry/H2B-mIFP |
Laboratory of Jorg Mansfield |
(Zerjatke et al., 2017) |
Software and algorithms |
|
|
StackReg |
https://imagej.net/plugins/stackreg
|
(Thévenaz et al., 1998) |
CellProfiler v3.1.8 |
https://cellprofiler.org/
|
(McQuin et al., 2018) |
caret v6.0–86 |
https://cran.r-project.org/web/packages/caret/vignettes/caret.html
|
|
scikit-learn v0.24 |
https://scikit-learn.org/stable/
|
|
Fastai |
https://github.com/fastai/fastai
|
|
PHATE |
https://github.com/KrishnaswamyLab/PHATE
|
(Moon et al., 2019) |
Leidenalg v0.8.3 |
https://github.com/vtraag/leidenalg
|
(Traag et al., 2019) |
scanpy v1.6 |
https://github.com/theislab/scanpy
|
(Wolf et al., 2018) |
singlecellVR |
singlecellvr.com
|
(Stein et al., 2020) |