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. Author manuscript; available in PMC: 2023 Mar 16.
Published in final edited form as: Cell Syst. 2021 Nov 19;13(3):230–240.e3. doi: 10.1016/j.cels.2021.10.007
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Please see a detailed list of antibodies used in Table S1
Deposited data
Single cell imaging data This study http://doi.org/10.5281/zenodo.4525425.
Experimental models: Cell lines
Retinal pigment epithelial cells (hTERT-RPE-1) ATCC CRL-4000
Human pancreatic epithelial cells (hTERT-HPNE) ATCC CRL-4023
RPE-PCNA-mTurqoise2 Laboratory of Jeremy Purvis (Chao et al., 2019)
RPE-p21-mTq2/cycD1-mVenus/DHB-mCherry/H2B-mIFP Laboratory of Jorg Mansfield (Zerjatke et al., 2017)
Software and algorithms
StackReg https://imagej.net/plugins/stackreg (Thévenaz et al., 1998)
CellProfiler v3.1.8 https://cellprofiler.org/ (McQuin et al., 2018)
caret v6.0–86 https://cran.r-project.org/web/packages/caret/vignettes/caret.html
scikit-learn v0.24 https://scikit-learn.org/stable/
Fastai https://github.com/fastai/fastai
PHATE https://github.com/KrishnaswamyLab/PHATE (Moon et al., 2019)
Leidenalg v0.8.3 https://github.com/vtraag/leidenalg (Traag et al., 2019)
scanpy v1.6 https://github.com/theislab/scanpy (Wolf et al., 2018)
singlecellVR singlecellvr.com (Stein et al., 2020)