Table 3.
Gene | Position | Base | Case | ||||
---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | |||
nsp2 | 1613 | A | 0 | 70.7 | 0.1 | 97.4 | 0 |
T | 0 | 0 | 0.1 | 0 | 0 | ||
G | 0 | 0 | 0.1 | 0 | 0 | ||
C | 100 | 29.3 | 99.8 | 2.6 | 100 | ||
Depth | 10,346 | 1,078 | 1,992 | 114 | 10,139 | ||
nsp4 | 9565 | A | 0 | 0 | 0 | 0 | 0 |
T | 83.5 | 48.0 | 94.1 | 99.9 | 79.9 | ||
G | 0 | 0 | 0 | 0 | 0 | ||
C | 16.5 | 52.0 | 5.9 | 0.1 | 20.1 | ||
Depth | 13,893 | 13,253 | 6,656 | 18,554 | 15,709 | ||
nsp6 | 11286 | A | 1.7 | 3.1 | 3.3 | 1.4 | 2.0 |
T | 94.9 | 90.5 | 90.9 | 96.3 | 94.0 | ||
G | 3.4 | 6.4 | 5.7 | 2.3 | 4.0 | ||
C | 0 | 0 | 0 | 0 | 0 | ||
Depth | 20,745 | 12,194 | 9,999 | 36,273 | 20,443 | ||
nsp6 | 11287 | A | 4.3 | 8 | 7.7 | 2.8 | 5.1 |
T | 2.1 | 3.5 | 3.7 | 1.8 | 2.3 | ||
G | 93.6 | 88.6 | 88.6 | 95.4 | 92.6 | ||
C | 0 | 0 | 0 | 0 | 0 | ||
Depth | 20,788 | 13,500 | 10,009 | 36,375 | 20,462 | ||
nsp6 | 11511 | A | 0 | 0 | 0 | 0 | 0 |
T | 0 | 20.4 | 0 | 27.1 | 0 | ||
G | 0 | 0 | 0 | 0 | 0 | ||
C | 100 | 79.6 | 100 | 72.9 | 99.9 | ||
Depth | 14,116 | 2,010 | 6,557 | 48,036 | 10,454 | ||
ORF8 | 28254 | A | 93.0 | 94.6 | 94.2 | 95.2 | 96.5 |
T | 0.1 | 0 | 0 | 0 | 0 | ||
G | 0.0 | 0 | 0 | 0 | 0 | ||
C | 3.3 | 1.4 | 1.4 | 3.7 | 1.5 | ||
Dela | 3.7 | 4.0 | 4.4 | 1.1 | 2.0 | ||
Depth | 17,168 | 4,656 | 5,297 | 82,051 | 20,152 |
Del, base deletion.