| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Critical commercial assays | ||
| DNeasy PowerLyzer PowerSoil Kit | QIAGEN | Cat. No. / ID: 12855-50 |
| Deposited data | ||
| Raw sequencing data | This publication | ENA: PRJEB48735 |
| Processed data and metadata | This publication | https://github.com/adamsorbie/Stroke_Microbiota_reproducibility/tree/main/data |
| Software and algorithms | ||
| Powmic | (Chen, 2020) | https://github.com/lichen-lab/powmic |
| FastQC/MultiQC | (Andrews, 2010; Ewels et al., 2016) | https://github.com/s-andrews/FastQC/https://multiqc.info/ |
| Cutadapt | (Martin, 2011) | https://cutadapt.readthedocs.io/en/stable/ |
| DADA2 | (Callahan et al., 2016) | https://benjjneb.github.io/dada2/index.html |
| QIIME2 | (Bolyen et al., 2019) | https://qiime2.org/ |
| Phyloseq | (McMurdie and Holmes, 2013) | https://joey711.github.io/phyloseq/ |
| R | The R foundation | https://www.r-project.org/ |
| ImageJ | N/A | https://imagej.nih.gov/ij/ |
| BioRender | BioRender | https://biorender.com/ |
| Other | ||
| Chow | Ssniff | V1574-300 |
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