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. 2022 Mar 4;13:841154. doi: 10.3389/fpls.2022.841154

FIGURE 5.

FIGURE 5

Methylation dynamics on transposable elements (TEs). The Venn diagrams of DMCs on TEs among accessions (A) and the Venn diagrams of TEs annotated with a DMC (DMC-TEs) among accessions (B). DMCs in different sequence contexts (CG, CHG, and CHH) are annotated separately. (C) The number and proportion of all TEs in the reference genome, and all, accession-specific (Acc.sp), accession-shared (Acc.sh) and four-accession-shared (4 Acc.sh) DMC-TEs for different superfamilies. Acc. sp. refers to DMC-TEs found only in one specific accession, Acc.sh refers to DMC-TEs shared by at least two accessions, and 4 Acc.sh refers to DMC-TEs shared by all four analyzed accessions.