Table 4.

Time series transcript abundance datasets used in this study

Organism	S. cerevisiae		M. musculus (liver)		A. thaliana (whole leaf)
Synch. in	Cell cycle	Cell cycle	Circadian	Circadian	Diurnal	Circadian
Technology	RNASeq	Microarray	Microarray	RNASeq	Microarray	Microarray
Period	75 min*	94 min*	24 h	24 h	24 h	24 h
Duration	245 min	254 min	48	42	48	48
Frequency	5 min	16 min	2 h	6 h	4 h	4 h
Timepoints/cycle	15	5.875	12	4	6	6
Reference	[53]	[6]	[29]	[29]	[26] (LL_LDHC)	[26] (LDHC)
No. of genes${}^{†}$	5910	5718	19,750	18,388	22,484	22,484
No. of TFs${}^{†}$	304	307	1373	1118	1415	1415
No. of core	17	17	15	14	11	11

LL_LDHC: Constant light and temperature; LDHC: 24 hour cycling light and temperature

*Cell-cycle period length was taken from the respective publication, which estimated period length using the CLOCCS algorithm [54]

${}^{†}$ Counts are based on post-processed datasets (see Materials and Methods)