TABLE 1.
Probe melting temperatures and nucleotide sequence results for codon 550
| Patient (genotype) and mos of treatment | Mean probe melting temperature (°C) ± SDa
|
Temperature change relative to pretreatment (°C)
|
Interpretation | Sequence result
|
|||||
|---|---|---|---|---|---|---|---|---|---|
| WT (ATG) | M1 (GTG) | M2 (ATT) | WT (ATG) | M1 (GTG) | M2 (ATT) | Population | Cloning | ||
| A (D) | |||||||||
| 0 | 62.2 ± 0.8 | 59.5 ± 0.4 | 54.3 ± 0.4 | ATG | ATG | ||||
| 9 | 63.2 ± 0.9 | 60.4 ± 0.6 | 54.3 ± 0.4 | <1 | <1 | <1 | ATG | ATG | |
| 23 | 56.5 ± 0.2 | 55.6 ± 1.0 | 60.9 ± 0.1 | −5.7 | −3.9 | 6.6 | ATT | ATT | ATT (15 clones) |
| B (C) | |||||||||
| 0 | 62.0 ± 0.4 | 60.4 ± 0.6 | 54.1 ± 0.6 | ATG | ATG | ||||
| 25 | 57.0 ± 0.7 | 54.5 ± 0.6, | 52.0 ± 1.0, | −5.0 | −5.9 | −2.1 | GTG & ATT | (A/G)T(G/T) | 8 GTG 12 ATT |
| 64.1 ± 0.4b | 60.6 ± 0.7b | 3.7 | 6.5 | ||||||
| 31 | 56.7 ± 0.4 | 53.8 ± 0.6, | 51.8 ± 0.4, | −5.3 | −6.6 | −2.3 | GTG & ATT | (A/G)T(G/T) | |
| 65.0 ± 1.1b | 602. ± 0.3b | 4.6 | 6.1 | ||||||
| C (B) | |||||||||
| 0 | 61.3 ± 0.6 | 58.6 ± 0.4 | 53.6 ± 0.3 | ATG | ATG | ||||
| 19 | 55.7 ± 0.3 | 54.8 ± 1.1 | 59.4 ± 0.6 | −5.6 | −3.8 | 5.8 | ATT | ATT | |
| D (D) | |||||||||
| 0 | 61.8 ± 0.3 | 59.0 ± 0.7 | 54.7 ± 0.6 | ATG | ATG | ||||
| 29 | 56.5 ± 0.3 | 55.3 ± 0.1 | 61.0 ± 1.0 | −5.3 | −3.7 | 6.3 | ATT | ATT | |
| E (D) | |||||||||
| 0 | 61.7 ± 0.3 | 59.3 ± 0.4 | 54.4 ± 0.6 | ATG | ATG | ||||
| 28 | 57.0 ± 0.2 | 56.6 ± 0.2 | 59.8 ± 0.6 | −4.7 | −2.7 | 5.4 | ATT | ATT | |
| F (A) | |||||||||
| 0 | 61.6 ± 0.1 | 60.2 ± 0.4 | 54.1 ± 0.7 | ATG | ATG | ||||
| 16 | 55.7 ± 0.5 | 54.1 ± 0.7 | 60.5 ± 0.9 | −5.9 | −6.1 | 6.4 | ATT | ATT | |
| G (A) | |||||||||
| 0 | 60.4 ± 1.0 | 59.3 ± 1.1 | 54.1 ± 0.6 | ATG | ATG | ||||
| 13 | 57.3 ± 0.7 | 62.4 ± 0.8 | 51.1 ± 0.5 | −3.1 | 3.1 | −3.0 | GTG | GTG | |
| Off 3c | 56.2 ± 1.6 | No clear peak | No clear peak | −4.2 | ? | ? | Not ATG | (A/G)T(C/G) | 4 ATC 10 GTG |
| H (D) | |||||||||
| 2 | 62.4 ± 1.0 | 60.6 ± 0.3 | 54.7 ± 0.9 | ATG | ATG | ||||
| 12 | 57.5 ± 0.5 | 63.6 ± 0.5 | 51.6 ± 0.5 | −4.9 | 3.0 | −3.1 | GTG | GTG | |
| Off 6c | 62.0 ± 0.3 | 60.1 ± 0.5 | 53.9 ± 0.8 | <1 | <1 | <1 | ATG | ATG | |
Means were derived from at least three determinations.
Two peaks.
Off treatment.