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. 2022 Mar 18;12:4742. doi: 10.1038/s41598-022-08359-x

Figure 4.

Figure 4

Comparative poses of co-crystallized ligands of diverse GyrBs and analysis of the best-predicted docking pose of PQPNN. (A) Computationally performed overlay of PQd and co-crystallized ligand-with GyrBs: ADP (cyan), ATP (light green) AX7 (orange), novobiocin (white), ANP (green), PQd (yellow) and PQP (magenta). The black circle highlights the overlapping nitrogen of the co-crystallized ligands. (B) 3D representation of the 3ZKBL-PQPNN complex. (C) 2D interaction diagram of the 3ZKBL-PQPNN complex. (D) 3D representation of PQPNN-3ZKBL complex superimposed with PQd (yellow backbone).