Table 2. The description of variant type and position on the full-length genomic DNA sequences of EgDELLA1, EgGRF1, EgGA20ox1, EgAPG1 and EgExp4 between the short and tall oil palm groups, using PacBio SMRT sequencing technology.
| Gene | No. of Full-length genomic DNA sequences | No. of full-length genomic DNA sequences in short group | No. of full-length genomic DNA sequences in tall group | Variation position from the forward primer position | Variation change from the reference genomic DNA sequences | Variant type | Variant change mostly found in |
|---|---|---|---|---|---|---|---|
| EgDELLA1 | 1,166 | 578 | 677 | 312 | T/TA | Insertion | some short oil palm |
| 2,100 | T/A | SNP | some short oil palm | ||||
| 2,248 | G/A | SNP | some short oil palm | ||||
| EgGRF1 | 909 | 468 | 441 | 1,044 | TATA/T | Deletion | some short oil palm |
| 1,100 | G/GT | Insertion | some short oil palm | ||||
| 1,553 | A/ATCTC | Insertion | some short oil palm | ||||
| 1,553 | ATCTCTC/A | Deletion | some tall oil palm | ||||
| EgGA20ox1 | 1,494 | 767 | 726 | 1,428 | G/GAA | Insertion | some short oil palm |
| 1,428 | G/GA,GAAA | Insertion | some tall oil palm | ||||
| 1,468 | T/G | SNP | some short oil palm | ||||
| EgAPG1 | 387 | 156 | 231 | n/a | n/a | n/a | n/a |
| EgExp4 | 5,384 | 3,249 | 2,135 | 118 | T/C | SNP | some tall oil palm |
| 989 | TC/T | deletion | some tall oil palm |
Notes:
n/a = no variation.
No. = number.