Skip to main content
. 2022 Mar 16;10:e13046. doi: 10.7717/peerj.13046

Table 2. The description of variant type and position on the full-length genomic DNA sequences of EgDELLA1, EgGRF1, EgGA20ox1, EgAPG1 and EgExp4 between the short and tall oil palm groups, using PacBio SMRT sequencing technology.

Gene No. of Full-length genomic DNA sequences No. of full-length genomic DNA sequences in short group No. of full-length genomic DNA sequences in tall group Variation position from the forward primer position Variation change from the reference genomic DNA sequences Variant type Variant change mostly found in
EgDELLA1 1,166 578 677 312 T/TA Insertion some short oil palm
2,100 T/A SNP some short oil palm
2,248 G/A SNP some short oil palm
EgGRF1 909 468 441 1,044 TATA/T Deletion some short oil palm
1,100 G/GT Insertion some short oil palm
1,553 A/ATCTC Insertion some short oil palm
1,553 ATCTCTC/A Deletion some tall oil palm
EgGA20ox1 1,494 767 726 1,428 G/GAA Insertion some short oil palm
1,428 G/GA,GAAA Insertion some tall oil palm
1,468 T/G SNP some short oil palm
EgAPG1 387 156 231 n/a n/a n/a n/a
EgExp4 5,384 3,249 2,135 118 T/C SNP some tall oil palm
989 TC/T deletion some tall oil palm

Notes:

n/a = no variation.

No. = number.