Table 5. Significant (the Bonferroni of false discovery rate (FDR) < 0.05) single nucleotide polymorphisms (SNPs) associated with BaYMV disease resistance identified using FarmCPU model.
| Site | Marker | Chr | POS/bp | REF | ALT | p value | PVE (%) | Estimate of marker |
|---|---|---|---|---|---|---|---|---|
| Yangzhou | QLB1 | 3H | 612473728 | G | T | 1.29E−06 | 28.58 | Mapped gene |
| SNP2571 | 6H | 557771117 | T | C | 6.94E−13 | 24.21 | Novel resistant locus | |
| Yancheng | SNP3426 | 3H | 419648980 | C | T | 3.36E−06 | 0.28 | |
| QLB1 | 3H | 612473728 | G | T | 5.03E−06 | 31.80 | Mapped gene | |
| SNP4036 | 5H | 40265162 | A | G | 1.81E−07 | 19.23 | Novel resistant locus | |
| SNP1839 | 6H | 153073031 | C | T | 6.21E−06 | 2.74 | ||
| SNP0024 | 7H | 18589900 | A | G | 6.66E−06 | 19.79 | Novel resistant locus |