Table 2. The root mean square error (RMSE), coverage and average length of the posterior 50% equal-tailed intervals, and Effective Sample Size (ESS) for two ARG properties inferred by ARGinfer and ARGweaver.
R | Method | RMSE | 50% credible interval | ESS | ||
---|---|---|---|---|---|---|
Coverage | Average length | |||||
A. Total branch length per site (in generations) | 1 | ARGinfer | 6729 | 0.44 | 8300 | 360 |
ARGweaver | 6620 | 0.41 | 7889 | 317 | ||
2 | ARGinfer | 6191 | 0.53 | 8714 | 1177 | |
ARGweaver | 6430 | 0.52 | 8496 | 675 | ||
4 | ARGinfer | 6877 | 0.51 | 8827 | 2478 | |
ARGweaver | 6931 | 0.51 | 8730 | 932 | ||
B. Number of Ancestral recombination events | 1 | ARGinfer | 9.45 | 0.49 | 12.09 | 171 |
ARGweaver | 9.53 | 0.54 | 11.73 | 565 | ||
2 | ARGinfer | 5.34 | 0.57 | 7.57 | 438 | |
ARGweaver | 5.70 | 0.49 | 7.35 | 1086 | ||
4 | ARGinfer | 3.72 | 0.53 | 4.78 | 970 | |
ARGweaver | 3.83 | 0.52 | 4.67 | 1398 |