TABLE 1.
Characterization of strains used in the present study
Strain(s)a | Clarithromycin MIC (μg/ml) | 23S mutation(s) detected by:
|
|
---|---|---|---|
Conventional methodsb | PCR-LiPA | ||
C3II | >256 | WTc | WT |
1714, 1309, 1462, 11496 | <2 | WT | WT |
1578–96, H2, 71, 35888, 1759, 11, 1710, 10, 1307, 1403, 1295, 2595, 2577, AB G1-2 | >256 | A2142G | A2142G |
1066–97, 7, 8, AB1125, CB1159, HS1146 | 4–128 | A2142G | A2142G |
1467, AB C1-5 | >256 | A2142C | A2142C |
AB T1-2 | 16 | A2142T | A2142T |
82, 1190, 1213, 1289, 1315, 1377, 1388, 1392, 1394, 1401, 1553, MOR, FERA | >256 | A2143G | A2143G |
4, 15, 333, 34319, MARJE, MIS, AB G2-3 | 4–64 | A2143G | A2143G |
AB C2-5 | 16 | A2143C | A2143C |
1538 | >256 | WT + A2143G | WT + A2143G |
1470 | >256 | A2142G | A2142G + A2143G + WT |
LINAN 1567 | >128 | A2142C + A2143G + WT | A2142C + A2143G + WT |
PAP | 16 | WT + A2142G | WT + A2142G |
140–97 | <2–>256 | WT | WT + A2142G + A2143G |
1264 | >256 | A2142G | A2142G + A2143G |
1075 | >256 | A2143G | A2142G + A2143G |
AB T2-16 | <1 | A2143T + WT | WT |
Laboratory-derived artificial strains are underlined.
Conventional methods included direct sequence analysis, RFLP, and probe hybridization in liquid phase.
WT, wild type.