Table 1.
Burden tests for UQCRC1 in the AMP-PD cohort
Burden test | All variants | Coding variants | Nonsynonymous variants | ||||||
---|---|---|---|---|---|---|---|---|---|
NumVar | NumPolyVar | p-value | NumVar | NumPolyVar | p-value | NumVar | NumPolyVar | p-value | |
Zeggini | 73 | 54 | 0.562 | 18 | 13 | 0.619 | 12 | 9 | 0.721 |
SKAT-O | 73 | 54 | 0.77 | 18 | 13 | 0.586 | 12 | 9 | 0.712 |
SKAT | 73 | 54 | 0.865 | 18 | 13 | 0.476 | 12 | 9 | 0.594 |
Madson-Browning | 73 | 54 | 0.487 | 18 | 13 | 0.046 | 12 | 9 | 0.109 |
Fp | 73 | 54 | 0.712 | 18 | 13 | 0.489 | 12 | 9 | 0.898 |
CMC | 73 | 54 | 0.596 | 18 | 13 | 0.629 | 12 | 9 | 0.731 |
Key: AMP-PD, Accelerating Medicines Partnership–Parkinson’s disease; CMC, combined multivariate and collapsing; NumPolyVar, number of polymorphic genotypes; NumVar, number of variants; SKAT, sequence kernel association test; SKAT-O, sequence kernel association test optimized version.