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. 2022 Mar 7;13:847789. doi: 10.3389/fpls.2022.847789

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Copyright © 2022 Mangino, Arrones, Plazas, Pook, Prohens, Gramazio and Vilanova.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Genome-wide association mapping with linkage disequilibrium (LD) block heatmap of significant regions and potential candidate genes controlling PA, FA, and PUC in eggplant. (A,C,F) Manhattan plot for PA (A), FA (C), and PUC (F). Arrows indicate the position of main peaks detected for each trait. The red and green horizontal lines represent, respectively, FDR and Bonferroni significance thresholds at p = 0.05. (B,D,E,G–I) Local Manhattan plot (top) and LD heatmap (bottom) surrounding the peaks PA10 (B), FA1 (D), FA10 (E), PUC1 (G), PUC10.2 (H) and PUC10.3 (I). Pairwise LD between SNPs is indicated as values of R² values: red indicates a value of 1 and white indicates 0. (J–L) Structure of candidate genes MYB113 (SMEL_010g351850.1) (J), MYB113 (SMEL_001g120500.1) (K), and COP1 (SMEL_010g339180.1) (L) and effect of the high-impact variants detected in those of the eight founders.