TABLE 1.
Statistics of the genotyping using the eggplant 5k probes Single Primer Enrichment Technology (SPET) platform of the 420 S3MEGGIC population individuals using the “67/3” eggplant reference genome (Barchi et al., 2019b).
| Chr | Markers | Filtered markers | % Markers | % Filtered markers | Chr length (Mb) | Marker density (Mb) | Filtered marker density |
| 1 | 3,234 | 1,205 | 14.60 | 15.60 | 13.66 | 236.82 | 88.24 |
| 2 | 1,119 | 424 | 5.05 | 5.49 | 8.34 | 134.21 | 50.85 |
| 3 | 2,004 | 758 | 9.05 | 9.81 | 9.71 | 206.41 | 78.07 |
| 4 | 1,567 | 588 | 7.08 | 7.61 | 10.57 | 148.23 | 55.62 |
| 5 | 1,438 | 571 | 6.49 | 7.39 | 4.39 | 327.80 | 130.16 |
| 6 | 2,108 | 794 | 9.52 | 10.28 | 10.90 | 193.38 | 72.84 |
| 7 | 2,483 | 328 | 11.21 | 4.25 | 14.24 | 174.34 | 23.03 |
| 8 | 1,392 | 550 | 6.29 | 7.12 | 10.96 | 126.98 | 50.17 |
| 9 | 1,841 | 625 | 8.31 | 8.09 | 3.61 | 509.80 | 173.07 |
| 10 | 2,069 | 798 | 9.34 | 10.33 | 10.67 | 193.86 | 74.77 |
| 11 | 1,260 | 453 | 5.69 | 5.86 | 7.23 | 174.23 | 62.64 |
| 12 | 1,631 | 630 | 7.36 | 8.16 | 10.05 | 162.33 | 62.70 |
| Total | 22,146 | 7,724 | 100.00 | 100.00 | 114.33 | ||
| Average | 215.70 | 76.85 |