TABLE 5.
Antibiotic | Mutant genes | Genotypic resistance testing | |
| |||
PCR, n (%) | WGS, n (%) | ||
Clarithromycin | 23S rRNA | 32 (88.9) | 33 (91.7) |
Amoxicillin | PBP-1A | 8 (22.2) | 8 (22.2) |
Levofloxacin | gyrA | 17 (47.2) | 18 (50.0) |
Metronidazole | rdxA | 16 (44.4) | 18 (50.0) |
Tetracycline | 16S rRNA | 0 (NA) | 0 (NA) |
Furazolidone | oorD/porD | 0 (NA) | 0 (NA) |
PCR, polymerase chain reaction; WGS, whole genome sequencing.