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. 2022 Feb 15;8(2):000742. doi: 10.1099/mgen.0.000742

Fig. 5.

Fig. 5.

A core-genome, maximum-likelihood SNP phylogeny of C-III genomes displaying coding regions conserved or lost among lineages. Unique coding regions are present in all three major lineages of C-III, based on an analysis with ls-bsr (see Methods). The phylogeny was rooted by querying SNPs in C. difficile CD630.