Table 2.
Summary information for the bacterial strains used in the study
|
Organism |
Sequence type |
Reference accession |
Set |
|---|---|---|---|
|
Salmonella enterica ser. Albany |
292 |
SRR3933152 |
S. enterica panel |
|
Salmonella enterica ser. Typhimurium |
19 |
SRR3933092 |
|
|
Salmonella enterica ser. Enteritidis |
11 |
SRR3933133 |
|
|
Salmonella enterica ser. I 4,[5],12:i:- |
19 |
SRR3933156 |
|
|
Escherichia coli O157:H7 |
11 |
GCF_016458895.1 |
E. coli and L. monocytogenes run 1 |
|
Escherichia coli O157:H7 |
11 |
GCF_016458935.1 |
|
|
Escherichia coli O157:H7 |
11 |
GCF_016458905.1 |
|
|
Escherichia coli O157:H7 |
11 |
GCF_016458945.1 |
|
|
3 |
GCA_004142705.2 |
||
|
7 |
GCA_003900515.2 |
||
|
Escherichia coli O9:H10 |
540 |
GCA_003792995.1 |
E. coli and L. monocytogenes runs 2 and 3 |
|
Escherichia coli O89:H9 |
10 |
GCA_003792995.1 |
|
|
Escherichia coli O83:H42 |
1485 |
GCA_003769125.2 |
|
|
Escherichia coli O117:H42 |
2207 |
GCA_008386435.1 |
|
|
554 |
GCA_004434345.3 |
||
|
6 |
GCA_004501425.3 |