Table 1.
High Fst SNPs distributed in each hspEAsia subgroup and involved genes∗
|
Subgroup |
Gene |
Annotation |
Fst |
SNP coordinate |
|---|---|---|---|---|
|
Sg1 (YunnanMP) |
hefC |
Inner pump of a multidrug efflux system |
0.891 |
827 628 |
|
porB |
Pyruvate-ferredoxin oxidoreductase subunit beta |
0.800 |
1 175 532 |
|
|
hefC |
Inner pump of a multidrug efflux system |
0.757 |
827 633 |
|
|
flaA |
Flagellin A |
0.748 |
833 437 |
|
|
gltA |
Citrate synthase |
0.731 |
1 418 093 |
|
|
tlpD |
Chemotaxis sensor |
0.716 |
836 384 |
|
|
katA |
Catalase |
0.714 |
507 178 |
|
|
gltA |
Citrate synthase |
0.706 |
1 418 291 |
|
|
gltA |
Citrate synthase |
0.706 |
1 418 293 |
|
|
flaA |
Flagellin A |
0.705 |
833 501 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.694 |
1 536 189 |
|
|
oppD |
Oligopeptide permease ATPase protein |
0.669 |
283 539 |
|
|
oppD |
Oligopeptide permease ATPase protein |
0.663 |
283 540 |
|
|
porB |
Pyruvate-ferredoxin oxidoreductase subunit beta |
0.649 |
1 175 543 |
|
|
hopI |
Outer membrane protein HopI |
0.638 |
1 220 823 |
|
|
gltA |
Citrate synthase |
0.626 |
1 418 759 |
|
|
Sg2 (Fujian) |
hofC |
Outer membrane protein involved in adhesion and diffusion of cations including antibiotics |
0.855 |
496 438 |
|
hofC |
Outer membrane protein involved in adhesion and diffusion of cations including antibiotics |
0.850 |
496 437 |
|
|
hofC |
Outer membrane protein involved in adhesion and diffusion of cations including antibiotics |
0.800 |
496 436 |
|
|
katA |
Catalase |
0.756 |
507 441 |
|
|
hopB/alpB |
Outer membrane protein, Omp21 |
0.704 |
983 839 |
|
|
flaA |
Flagellin A |
0.651 |
833 026 |
|
|
Sg3 (China North East) |
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.752 |
1 536 144 |
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.752 |
1 536 145 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.738 |
1 536 086 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.738 |
1 536 093 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.713 |
1 536 091 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.706 |
1 535 959 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.701 |
1 535 957 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.701 |
1 535 965 |
|
|
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.637 |
1 535 958 |
|
|
Sg5 (Korea) |
hypC |
hydrogenase expression/formation protein |
0.652 |
959 689 |
|
Sg6 (Okinawa) |
rhoD |
Rhodanese, a cyanide-detoxifying enzyme |
0.646 |
1 299 845 |
|
Sg7 (Japan_Major) |
frpB-4 |
TonB-dependent outer membrane Ni importer |
0.658 |
1 536 096 |
∗ Criteria for showing high Fst of each subpopulation in this table is based on the following:
Fst > 0.6.
Sg4 (Mongolia) is exclued from the table as it does not belong to the hspEAsia subgroup.
SNPs of high/low and China_All are not listed because they were specific comparisons, not representing subpopulations.