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. 2022 Mar 20;19(1):373–385. doi: 10.1080/15476286.2022.2043040

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© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Characteristics of AS in M. oryzae KJ201 under different conditions.

(a) Among 13,306 annotated genes of KJ201, 2,413 are subjected to AS under one or more conditions. Transcript isoforms from 29 and 499 genes were detected only in mycelia and during infection, respectively. The remaining 1,883 genes produced AS transcripts under both conditions. (b) The number of AS genes in each sample predicted using three FPKM values for cut-off. (c) PCA analysis of the annotated transcripts and their isoforms. The log2 FPKM values of individual transcripts within each sample are used to calculate PCA distances. The standard PCA function implemented in prcomp was used for this analysis.