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. 2022 Mar 20;19(1):373–385. doi: 10.1080/15476286.2022.2043040

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© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 4. — Four types of AS observed and their distribution patterns under different conditions.

(a) Four types of AS, including intron retention (IR), exon skipping (ES), alternative 3’ splicing site (A3SS), and Alternative 5’ splicing site (A5SS), observed at the vegetative and five infection stages are shown. The black box denotes exon. (b) Sequence patterns at the splicing sites in annotated genes (left) and isoforms (right). The LOGO diagrams show 5 bp downstream and upstream from the splicing junctions.