Table 3.
List of the proteins produced using transcript isoforms generated via AS
| Protein encoding transcript variants |
|
Functional annotation++ |
|---|---|---|
| Annotation* | Detection+ | |
| maker-scaffold000002-augustus-gene-36.61-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Chitin recognition protein |
| maker-scaffold000077-augustus-gene-2.104-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | RNA-dependent RNA polymerase |
| augustus-scaffold000002-processed-gene-19.59-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | U6 snRNA phosphodiesterase |
| maker-scaffold000097-snap-gene-0.69-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | - |
| maker-scaffold000097-augustus-gene-1.54-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | - |
| maker-scaffold000098-augustus-gene-0.137-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | - |
| augustus-scaffold000110-processed-gene-1.149-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Ribosome-associated complex head domain |
| snap-scaffold000002-processed-gene-37.21-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | - |
| augustus-scaffold000002-processed-gene-41.0-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Ubiquitin system component Cue |
| maker-scaffold000032-snap-gene-14.129-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Helicase |
| augustus-scaffold000061-processed-gene-9.89-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Histidyl-tRNA synthetase |
| maker-scaffold000002-snap-gene-7.10-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Tetrahydrofolate dehydrogenase |
| maker-scaffold000031-snap-gene-38.67-mRNA-1 | Infection (7 dpi), Mock (0 dpi) | Ras family |
| maker-scaffold000003-augustus-gene-2.238-mRNA-1 | Infection (7 dpi) | - |
| maker-scaffold000095-augustus-gene-8.79-mRNA-1 | Infection (7 dpi) | Ras family |
| maker-scaffold000096-snap-gene-1.11-mRNA-1 | Infection (7 dpi) | Oxysterol-binding protein |
| maker-scaffold000110-augustus-gene-1.52-mRNA-1 | Mock (0 dpi) | - |
| maker-scaffold000002-augustus-gene-31.44-mRNA-1 | Mock (0 dpi) | G-protein alpha subunit 14 |
| maker-scaffold000011-snap-gene-4.92-mRNA-1 | Mock (0 dpi) | Peroxidase |
| maker-scaffold000062-augustus-gene-30.7-mRNA-1 | Mock (0 dpi) | UAA transporter family |
| maker-scaffold000060-augustus-gene-13.71-mRNA-1 | Mock (0 dpi) | Calreticulin/calnexin |
| maker-scaffold000095-snap-gene-7.11-mRNA-1* | Mock (0 dpi) | - |
| maker-scaffold000002-augustus-gene-31.42-mRNA-1* | Mock (0 dpi) | HECT-like Ub-conjugating enzyme (E2)-binding |
| maker-scaffold000092-augustus-gene-0.5-mRNA-1* | Mock (0 dpi) | Common central domain of tyrosinase 65 |
* The protein sequence was determined using the longest ORF prediction
+ The condition(s) in which each isoform was detected.
++ Predicted function of the resulting protein.