Table 2.
List of all genes present in the V. thibetica chloroplast genome
| Category | Group Genes | Name of Genes |
|---|---|---|
| Transcription and translation | Large Ribosomal proteins (LSU) | rpl2* (× 2), rpl14, rpl16*, rpl20, rpl22, rpl23 (× 2), rpl32, rpl33, rpl36 |
| Small Ribosomal proteins (SSU) | rps2, rps3, rps4, rps7 (× 2), rps8, rps11, rps12 (× 2), rps14, rps15, rps16*, rps18, rps19 | |
| RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 | |
| Translational initiation factor | infA | |
| rRNA genes | rrn16 (× 2), rrn23 (× 2), rrn4.5 (× 2), rrn5 (× 2) | |
| tRNA genes | trnA-UGC* (× 2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC*, trnH-GUG, trnI-CAU (× 2), trnI-GAU*, trnK-UUU*, trnL-CAA (× 2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU (× 2), trnP-UGG, trnQ-UUG, trnR-ACG (× 2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-UGU, trnV-GAC* (× 2), trnV-UAC, trnW-CCA, trnY-GUA | |
| Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| NADH oxidoreductase | ndhA*, ndhB*(× 2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Cytochrome b6/f complex | petA, petB, petD*, petG, petL, petN | |
| ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI | |
| Rubisco large subunit | rbcL | |
| ATP-dependent protease subunit gene | clpP** | |
| Other genes | Maturase | matK |
| Envelop membrane protein | cemA | |
| Subunit Acetyl-CoA-Carboxylate | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Unknown | Conserved Open reading frames | ycf1ψ (× 2), ycf2, ycf3**, ycf4, ycf15 (× 2) |
*Represents one intron, **represents two introns, (× 2) represents gene duplication in IR regions, and ψ represents pseudogene (one of the ycf1 duplicates contains pseudogene)