Table 1.
FISH probes used in this study
| Probe | Target taxon | Probe sequence 5′–3′ | Fluorophore | Reference |
|---|---|---|---|---|
| Eub338-I | Bacteria | GCTGCCTCCCGTAGGAGT | Dy490 or Atto532 | [22] |
| Eub338-II | Planctomycetes | GCAGCCACCCGTAGGTGT | Dy415 | [23] |
| Eub338-III | Verrucomicrobia | GCTGCCACCCGTAGGTGT | Dy415 | [23] |
| Alf968 | Alphaproteobacteria | GGTAAGGTTCTGCGCGTT | Dy490 or Atto620 | [24] |
| Gam42a | Gammaproteobacteria | GCCTTCCCACATCGTTT | Cy5 | [25] |
| Bac1058 | Bacteroidetes | TGAATGGCTGCTTCCAAGCCAACA | Rhodamine Red-X | [26] |
| Gran737 | Granulosicoccus sp. | TCAGCGTCAGTATTGTTCCAGA | Texas Red-X | This study |
| Gran670 | Granulosicoccus sp. | CACCGCTACACCCGGAATTCCGC | Texas Red-X | This study |
Probe name, target taxon, 5′–3′ sequence, fluorophores used, and references are indicated