Table 2.
Representative microbial species commonly found in the human gastrointestinal tract.
| Phylum | Genus | Species | Source |
|---|---|---|---|
| Bacteroidetes | Bacteroides | Bacteroides vulgatus | DSMZ 1447 |
| Bacteroidetes | Bacteroides | Bacteroides uniformis | DSMZ 6597 |
| Bacteroidetes | Bacteroides | Bacteroides fragilis nontoxigenic | ATCC 43858 |
| Bacteroidetes | Bacteroides | Bacteroides thetaiotaomicron | DSMZ 2079 |
| Bacteroidetes | Bacteroides | Bifidobacterium subtile Biavati | ATCC 27537 |
| Firmicutes | Clostridium | Clostridium ramosum | DSMZ 1402 |
| Actinobacteria | Bifidobacterium | Bifidobacterium adolescentis | DSMZ 20083 |
| Actinobacteria | Eggerthella | Eggerthella lenta | DSMZ 2243 |
| Firmicutes | Clostridium | Clostridium bolteae | DSMZ 15670 |
| Bacteroidetes | Bacteroides | Bacteroides fragilis enterotoxigenic (ET) | ATCC 43860 |
| Firmicutes | Clostridium | Clostridium saccharolyticum | DSMZ 2544 |
| Firmicutes | Lactobacillus | Lactobacillus paracasei | DSMZ 5622 |
| Bacteroidetes | Bacteroides | Bacteroides caccae | DSMZ 19024 |
| Bacteroidetes | Bacteroides | Bacteroides ovatus | DSMZ 1896 |
| Bacteroidetes | Bacteroides | Bacteroides xylanisolvens | DSMZ 18836 |
| Firmicutes | Blautia | Blautia obeum | DSMZ 25238 |
| Bacteroidetes | Parabacteroides | Parabacteroides merdae | DSMZ 19495 |
| Actinobacteria | Collinsella | Collinsella aerofaciens | DSMZ 3979 |
| Actinobacteria | Actinomycetales | Propionibacterium freudenreichii | CMM |
| Bacteroidetes | Parabacteroides | Parabacteroides distasonis | DSMZ 20701 |
| Firmicutes | Eubacterium | Eubacterium eligens | DSMZ 3376 |
| Firmicutes | Dorea | Dorea formicigenerans | DSMZ 3992 |
| Proteobacteria | Escherichia | Escherichia coli IAI1 | CMM |
| Bacteroidetes | Odoribacter | Odoribacter splanchnicus | DSMZ 20712 |
| Ascomycota | Candida | Candida albicans | CMM |
| Ascomycota | Candida | Candida tropicalis | CMM |
| Ascomycota | Candida | Candida parapsilosis | CMM |
| Ascomycota | Candida | Candida glabrata | CMM |