Table 6.
Discovered motifs by Multiple Sequence Alignment (MSA).
| No | Motif | EMBOSS Consensus | Cluster | Cluster Size | Frequency * | MSA Method |
|---|---|---|---|---|---|---|
| 1 | wwW | wwW | 2 | 14 | 1/(1) | CLUSTALW-O |
| xxW | MAFFT | |||||
| 2 | C[fl][rg][vl]rW | CxxxrW | 3 | 10 | 0/(0) | MAFFT |
| 3 | C[gpi][gs]cR | CxxxR | MUSCLE | |||
| 4 | [rkl]GLC | RGlc | 4 | 8 | 0/(0) | CLUSTALW-O |
| kGLC | MAFFT | |||||
| xGLc | MUSCLE | |||||
| 5 | c[wp]kG | cwkG | 1+5 | 4 | 0/(0) 0/(0) 0/(1) |
CLUSTALW-O MUSCLE |
| cxkG | T-Coffee | |||||
| 6 | Not Found | Non-consensus | 6 | 10 | 0/(0) | CLUSTALW-O MUSCLE MAFFT T-Coffee |
| 7 | l[rp][cw]c | lxxc | Singletons | 8 | 0/(0) | MUSCLE |
* Taken from TumorHoPe (outside parenthesis), and starPepDB (inside parenthesis).