Table 7.
Discovered Motifs by STREME.
| No | Motif | Cluster | Cluster Size | Matches in Positive Seqs. | Matches in Control Seqs. | Sites (%) | Score | Frequency * |
|---|---|---|---|---|---|---|---|---|
| 1 | WRP | 2 | 14 | 7 | 1 | 50 | 1.6 × 10−2 | 5/(5) |
| 2 | WVL | 5 | 1 | 35.7 | 8.2 × 10−2 | 0/(0) | ||
| 3 | WS[YR] | 3 | 0 | 21.4 | 1.1 × 10−1 | 1/(1)Y | ||
| 4 | WWWM | 3 | 0 | 21.4 | 1.1 × 10−1 | 0/(0) | ||
| 5 | CFRV | 3 | 10 | 3 | 0 | 30 | 1.1 × 10−1 | 1/(1) |
| 6 | HWK | 2 | 0 | 20 | 2.4 × 10−1 | 0/(0) | ||
| 7 | PRW | 2 | 0 | 20 | 2.4 × 10−1 | 3/(3) | ||
| 8 | CN[WG] | 4 | 8 | 3 | 0 | 37.5 | 1.0 × 10−1 | 34/(32)G |
| 9 | WARG | 3 | 0 | 37.5 | 1.0 × 10−1 | 0/(0) | ||
| 10 | GIC | 2 | 0 | 25.0 | 2.3 × 10−1 | 5/(4) | ||
| 11 | WKG | 1-5 | 4 | 3 | 1 | 75.0 | 2.4 × 10−1 | 0/(0) |
| 12 | KNKHK | 6 | 10 | 3 | 0 | 30.0 | 1.1 × 10−1 | 0/(0) |
| 13 | PSHL | 3 | 0 | 30.0 | 1.1 × 10−1 | 0/(0) | ||
| 14 | LRLRI | Singletons | 8 | 2 | 0 | 25.0 | 2.3 × 10−1 | 1/(1) |
| 15 | CC[CQ] | 3 | 1 | 37.5 | 2.8 × 10−1 | 0/(0) | ||
| 16 | LSP | All sequences | 54 | 11 | 1 | 20.4 | 3.4 × 10−3 | 3/(3) |
| 17 | WSYG | 7 | 0 | 13.0 | 8.2 × 10−3 | 0/(0) | ||
| 18 | WRPW | 5 | 0 | 9.3 | 3.2 × 10−2 | 2/(2) |
* Taken from TumorHoPe (outside parenthesis), and starPepDB (inside parenthesis).