Table 1.
Differential expression of circular RNA in IS.
Disease type | Model | Detection method | Change of expression profile | Specific core CircRNAs | Possible major biological processes and functions | Possible major signaling pathways/pathophysiological processes (target genes) | Refs. |
---|---|---|---|---|---|---|---|
Ischemic stroke | Mouse tMCAO model | Microarray analysis and qRT-PCR | 1320 CircRNA differentially expressed (among them, 283 cases changed at least one reperfusion time point (> two times), 16 cases changed at all three reperfusion time points) | Three up (Circ_008018, Circ_015350, Circ_ 016128); three down (Circ_011137, Circ_001729, Circ_006696) | Biological regulation, metabolic processes, cellular communication, and binding to proteins, ions, and nucleic acids | Mitogen-activated protein kinase signal, cell cycle, actin cytoskeleton regulation, and local adhesion | Mehta SL et al. [17] |
Mouse tMCAO model | Microarray analysis and qRT-PCR | 1027 CircRNA were differentially expressed, of which 914 were upregulated, and 113 were significantly downregulated | mmu_CircRNA_40001 mmu_CircRNA_013120 mmu_CircRNA_4080 | Multiple biological processes, cellular signaling pathways, and protein activity | Ten paths, the first two were Rap1 signal pass and Hippo path | Liu C et al. [18] | |
Peripheral blood of 80 AIS patients with different etiologies | Microarray analysis and qRT-PCR | 1) Atherosclerotic and thrombotic stroke: 219 differential expressions; 2) Atherosclerosis and undetermined stroke: 87 upregulated and 139 downregulated; 3) Patients with thrombotic stroke and unconfirmed stroke: eight were upregulated, and nine were downregulated | HSA_CircRNA_102488 | Differentially expressed CircRNAs interact primarily with a group of stroke-related miRNAs, including fatty acid biosynthesis, lysine degradation, arrhythmogenic right ventricular cardiomyopathy, or hypertrophic cardiomyopathy (HCM) | The RBP sites of hsa_CircRNA_102488 were clustered around AGO2 and FUS proteins | Aiora et al.[3] | |
Mouse tMCAO model and peripheral blood of patients with AIS | Microarray analysis and qRT-PCR | There were 128,198,789 CircRNA changes at 5 min, 3 h, and 24 h after IS, respectively | CircBBS2, CircPHKA2 | The biological processes related to stroke include immune process, metabolic process, and biological adhesion | Hippo signal Pathway, extracellular Matrix-receptor interaction, and Fatty Acid Metabolism | Lu D et al. [19] | |
Permanent distal MCAO model in mice (non-ischemic ipsilateral thalamus) | Microarray analysis and qRT-PCR | 2659 CircRNAs were differentially expressed (among them, 73 CircRNAs were significantly changed at seven and 14 days after stroke) | mmu_Circ:chr2:74568941-74573626, mmu_Circ: chr8:8639206-8639489, mmu_Circ:chr18:14633543-14636618 | Closely related to inflammation and self-repair, CircRNA plays an important role in secondary thalamic nerve degeneration and remodeling after focal cortical infarction | Metabolic pathway, cancer pathway, PI3K-Akt signal pathway, endocytosis, mitogen-activated protein kinase signal pathway, Ras signal pathway, proteoglycan in cancer, Rap1 signal pathway, local adhesion, axon guidance, and other pathways | Li f et al. [25] | |
PBMCs in AIS patients | HTS and qRT-PCR | 521 Circ RNA differentially expressed (including 373 upregulated and 148 downregulated) | Four up (hsa_cic:chr1:95609447-95616975, hsa_cic:chr15:55640530-55640923); four down (hsa_cic:chr9:80869752-80879232) | Neuroinflammation and neuroimmunity | The pathways involved include metabolic pathways, mitogen-activated protein kinase signaling pathways, some inflammatory pathways, immune pathways, differentiation, and apoptosis-related signaling pathways | Dong Z et al. [20] | |
OGD/R treatment of mouse hippocampal HT22 cells | Microarray analysis and QRT-PCR | Three upregulated and 12 downregulated | mmu-CircRNA-015947 | - | Apoptosis, metabolism, and immune-related pathways | Lin SP et al. [24] | |
Rat MCAO model (six left hemispheric brain tissues) | HTS and qRT-PCR | 40 upregulated and 47 downregulated (four days after MCAO) | Three up (CircRNA.17737,CircRNA.8828,CircRNA.14479); three down (CircRNA.1059,CircRNA.9967, CircRNA.6952) | Nervous system development and endocytosis | Cytoplasmic vesicles, vesicles, synapses, cytoskeletons, cytoplasmic vesicles | Duan X et al. [21] | |
Three AIS patients and three normal healthy controls | Microarray analysis and qRT-PCR | 2270 CircRNAs were differentially expressed, of which 659 CircRNAs were upregulated, and 1611 were downregulated | hsa_Circ_0005548 significantly upregulated, hsa_Circ_0000607 and hsa_Circ_0002465 decreased significantly, hsa_Circ_0000607/mir-337-3p/BCL2 axis | - | Endocytosis, energy metabolism, apoptosis, FOXO signaling pathway, platelet activation, neurotrophic factor signaling pathway, and VEGF signaling pathway | LiS et al. [22] | |
Five LAA stroke patients and four controls | Microarray analysis and qRT-PCR | 182 CircRNAs upregulated and 176 downregulated | hsa_CircRNA_0001599 | - | Chromatin modification, autophagy, platelet activation, and neural precursor cell proliferation | Li S et al. [23] |