ExpiCHO Expression System Kit |
Thermo Fisher Scientific |
Cat# A29133 |
Expi293 Expression System Kit |
ThermoFisher |
Cat# A14635 |
Phosphate-buffered saline (PBS) |
Thermo Fisher Scientific |
Cat# 14040133 |
Ni Sepharose excel resin |
Cytiva |
Cat# 17371202 |
CaptureSelect CH1-XL Affinity Matrix |
Thermo Fisher Scientific |
Cat# 1943462010 |
|
Chemicals and recombinant proteins |
|
Sodium chloride (NaCl) |
Sigma-Aldrich |
Cat# S9888 |
Concentrated hydrochloric acid (HCl) |
Sigma-Aldrich |
Cat# H1758 |
Bovine Serum Albumin (BSA) |
Sigma-Aldrich |
Cat# A9418 |
Tween 20 |
Fisher Scientific |
Cat# BP337-500 |
|
Critical commercial assays |
|
In-Fusion HD Cloning Kit |
Takara |
Cat# 639647 |
KOD Hot Start DNA Polymerase |
EMD Millipore |
Cat# 71086-3 |
PCR Clean-Up and Gel Extraction Kit |
Clontech Laboratories |
Cat# 740609.250 |
QIAprep Spin Miniprep Kit |
Qiagen |
Cat# 27106 |
NucleoBond Xtra Maxi |
Clontech Laboratories |
Cat# 740414.100 |
|
Deposited data |
|
Collection of antibody information |
This study |
Table S1 |
Custom scripts |
This study |
https://doi.org/10.5281/zenodo.6370701 |
|
Cell lines |
|
ExpiCHO cells |
Thermo Fisher Scientific |
Cat# A29127; RRID:CVCL_5J31 |
Expi293F cells |
Thermo Fisher Scientific |
Cat# A14527; RRID:CVCL_D615 |
|
Recombinant DNA |
|
phCMV3-COVOX-253 Fab heavy chain |
This study |
N/A |
phCMV3-COVOX-253 Fab light chain |
This study |
N/A |
phCMV3-SARS-CoV-2-RBD |
(Wu et al., 2020b) |
N/A |
|
Software and algorithms |
|
Octet analysis software 9.0 |
Fortebio |
N/A |
Python |
https://www.python.org/ |
N/A |
R |
https://www.r-project.org/ |
N/A |
IgBLAST |
(Ye et al., 2013) |
N/A |
Logomaker |
(Tareen and Kinney, 2020) |
N/A |
ANARCI |
(Dunbar and Deane, 2016) |
N/A |
MAFFT |
(Katoh and Standley, 2013) |
N/A |
FastTree |
(Price et al., 2010) |
N/A |
ggtree |
(Yu, 2020) |
N/A |
PyIR |
(Soto et al., 2020) |
N/A |
TensorFlow |
(Abadi et al., 2016) |
N/A |
|
Other |
|
Fab-CH1 2nd generation (FAB2G) biosensors |
ForteBio |
Cat# 18-5019 |