Table 3.
Gene | Primer | Sequence | To (°C) † | Expected Length (bp) | Reference |
---|---|---|---|---|---|
COI | Cox1_schis’_5′ | TCTTTRGATCATAAGCG | * 50–46 phase 1; 45 phase 2 | 1000 | Lockyer et al. [46] |
Cox1_schis’_3′ | TAATGCATMGGAAAAAAACA | ||||
CO1F15 | TTTNTYTCTTTRGATCATAAGC | * 50–46 phase 1; 45 phase 2 | 600 | Brant & Loker [2] | |
CO1R15 | TGAGCWAYHACAAAYCAHGTATC | ||||
CO1RH3R internal | TAAACCTCAGGATGCCCAAAAAA | ||||
28S | U178 | GCACCCGCTGAAYTTAAG | * 55–51 phase 1; 50 phase 2 | 1500 | Lockyer et al. [46], Tkach et al. [47], Olson et al. [48] |
L1642 | CCAGCGCCATCCATTTTCA | ||||
DIG12 internal | AAGCATATCACTAAGCGG | ||||
ECD2 internal | CTTGGTCCGTGTTTCAAGACGGG |
† Observable temperature; * Touchdown PCR. The annealing temperature was programmed to reduce to one degree per cycle (50–46 °C; 55–51 °C) for 15 cycles in phase one and a total of 20 cycles in phase two.