Table 1.
Characteristics of the predicted TLP genes in the A. sativum cv. Ershuizao genome.
| Gene | Genomic Location (Strand) | A. thaliana Homolog | Transcript ID in RNA-Seq Database | Size (bp) | Exons | CDS (bp) | Protein | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Size (aa) | MW (kDa) | pI | Signal Peptide | GH64 Domain |
GRAVY | |||||||
| AsTLP1 | Chr1:491780133..491781147 (+) | Pathogenesis-related thaumatin superfamily protein NP_001031792.1 |
Asa2G02997.1 | 1013 | 2 | 930 | 309 | 32.29 | 4.93 | 1–24 | 31–245 | 0.126 |
| AsTLP2 | Chr1:996536859..996536201 (−) | Osmotin 34 NP_192902.1 |
Asa2G01042.1 | 660 | 1 | 660 | 219 | 23.46 | 5.52 | 1–20 | 23–219 | −0.157 |
| AsTLP3 (AsPR5a) | Chr2:821219552..821220214 (−) | Asa2G01043.1 | 663 | 1 | 663 | 220 | 23.46 | 4.71 | 1–21 | 24–220 | −0.085 | |
| AsTLP4 | Chr2:1584165307..1584166065 (−) | TLP AAD02499.1 |
Asa3G06018.1 | 759 | 1 | 759 | 252 | 25.92 | 4.79 | 1–27 | 30–251 | 0.069 |
| AsTLP5 | Chr2:1617805168..1617805788 (−) | Osmotin 34 NP_192902.1 |
Asa4G02103.1 Asa4G02102.1 |
621 | 1 | 621 | 206 | 21.89 | 4.76 | 1–26 | 29–206 | −0.289 |
| AsTLP6 | Chr2:1617847011..1617847625 (−) | 615 | 1 | 615 | 204 | 21.74 | 4.76 | 1–24 | 27–204 | −0.263 | ||
| AsTLP7 | Chr2:1617850920..1617851543 (−) | Asa4G02101.1 | 624 | 1 | 624 | 207 | 22.02 | 4.77 | 1–27 | 30–207 | −0.295 | |
| AsTLP8 (AsPR5b) | Chr2:1618362333..1618362995 (+) | Asa4G02099.1 | 663 | 1 | 663 | 220 | 23.50 | 4.71 | 1–21 | 24–220 | −0.126 | |
| AsTLP9 (AsPR5c) | Chr2:1618377059..1618377721 (+) | Asa4G02100.1 | 663 | 1 | 663 | 220 | 23.59 | 4.74 | 1–21 | 24–220 | −0.164 | |
| AsTLP10 | Chr2:1618405507..1618406165 (−) | Asa3G05858.1 | 660 | 1 | 660 | 219 | 23.43 | 4.71 | 1–20 | 23–219 | −0.126 | |
| AsTLP11 | Chr2:1622416758..1622417381 (−) | Asa3G05840.1 | 624 | 1 | 624 | 207 | 22.08 | 5.70 | 1–27 | 30–207 | −0.211 | |
| AsTLP12 | Chr2:1684781475..1684782236 (+) | TLP AAD02499.1 |
Asa3G06302.1 | 762 | 1 | 762 | 253 | 26.16 | 4.27 | 1–29 | 32–252 | 0.056 |
| AsTLP13 | Chr2:1685003219..1685003978 (−) | Asa3G06331.1 | 759 | 1 | 759 | 252 | 26.28 | 4.24 | 1–28 | 31–251 | 0.012 | |
| AsTLP14 | Chr2:1685049653..1685050414 (−) | no detected | 762 | 1 | 762 | 253 | 26.06 | 4.18 | 1–29 | 32–252 | 0.087 | |
| AsTLP15 | Chr2:1685078657..1685079418 (−) | no detected | 762 | 1 | 762 | 253 | 26.06 | 4.18 | 1–29 | 32–252 | 0.068 | |
| AsTLP16 | Chr2:1685746745..1685747579 (+) | Asa3G06310.1 | 835 | 2 | 747 | 248 | 25.30 | 4.59 | 1–25 | 27–247 | 0.031 | |
| AsTLP17 | Chr2:1686634047..1686634808 (+) | Pathogenesis-related thaumatin superfamily protein NP_173432.2 |
Asa3G06319.1 | 762 | 1 | 762 | 253 | 26.09 | 4.18 | 1–29 | 32–252 | 0.054 |
| AsTLP18 | Chr2:1687188296..1687189055 (−) | TLP AAD02499.1 |
Asa3G06331.1 | 759 | 1 | 759 | 252 | 26.30 | 4.24 | 1–28 | 31–251 | 0.013 |
| AsTLP19 | Chr2:1687209664..1687210422 (−) | Asa3G06329.1 | 759 | 1 | 759 | 252 | 26.21 | 4.27 | 1–28 | 31–251 | 0.025 | |
| AsTLP20 | Chr2:1724629365..1724630114 (+) | Pathogenesis-related thaumatin superfamily protein NP_973870.1 |
Asa7G02264.1 | 750 | 1 | 750 | 249 | 25.42 | 4.39 | 1–26 | 28–248 | 0.081 |
| AsTLP21 | Chr4:777618126..777620378 (+) | Pathogenesis-related thaumatin superfamily protein NP_568046.1 |
Asa4G00901.1 | 2253 | 3 | 972 | 323 | 33.86 | 4.50 | 1–19 | 26–232 | −0.008 |
| AsTLP22 | Chr6:2008642583..2008643344 (+) | TLP AAD02499.1 |
Asa3G06325.1 | 762 | 1 | 762 | 253 | 26.09 | 4.18 | 1–29 | 32–252 | 0.085 |
| AsTLP23 | Chr7:682376071..682376964 (+) | Pathogenesis-related thaumatin superfamily protein NP_001119140.1 |
Asa5G05974.1 | 894 | 1 | 894 | 297 | 31.13 | 4.68 | 1–21 | 23–242 | 0.115 |
| AsTLP24 | Chr8:1265530915..1265533486 (−) | Pathogenesis-related thaumatin superfamily protein NP_177503.1 |
Asa7G04908.1 | 2572 | 2 | 753 | 250 | 25.97 | 9.07 | 1–26 | 31–247 | 0.081 |
| AsTLP25 | Chr8:1394582992..1394583731 (+) | Pathogenesis-related thaumatin superfamily protein NP_001324474.1 | Asa7G04378.1 | 741 | 1 | 741 | 246 | 26.03 | 8.10 | 1–21 | 24–245 | −0.005 |
| AsTLP26 | Scaffold9088: 51512..52273 | Pathogenesis-related thaumatin superfamily protein NP_173432.2 |
Asa3G06323.1 | 762 | 1 | 762 | 253 | 26.09 | 4.18 | 1–29 | 32–252 | 0.054 |
| AsTLP27 | Scaffold9089: 39596..38835 | TLP AAD02499.1 |
Asa3G06322.1 | 762 | 1 | 762 | 253 | 26.12 | 4.18 | 1–29 | 32–252 | 0.075 |
| AsTLP28 | Scaffold9089: 40346..41107 | 762 | 1 | 762 | 253 | 26.12 | 4.18 | 1–29 | 32–252 | 0.075 | ||
| AsTLP29 | Scaffold9089: 89114..89875 | Asa3G06320.1 | 762 | 1 | 762 | 253 | 26.06 | 4.18 | 1–29 | 32–252 | 0.044 | |
| AsTLP30 | Scaffold9091: 149728..150486 | Asa3G06315.1 | 759 | 1 | 759 | 252 | 26.28 | 4.24 | 1–28 | 31–251 | 0.006 | |
| AsTLP31 | Scaffold12619: 87332..88248 | no detected | 917 | 3 | 738 | 245 | 26.47 | 5.75 | 1–22 | 25–244 | −0.134 | |
| AsTLP32 | Scaffold12619: 99641..100558 | no detected | 918 | 3 | 738 | 245 | 26.46 | 5.75 | 1–22 | 25–244 | −0.149 | |