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. 2022 Mar 11;14(3):582. doi: 10.3390/v14030582

Figure 2.

Figure 2

Phylogenetic networks of the nucleotide sequences of the complete coat protein (CP) coding regions from the plasmid clones of narcissus viruses. (A) Narcissus late season yellows virus (NLSYV). The nucleotide sequences of CP coding regions of Japanese yam mosaic virus (JYMV) [46], narcissus yellow stripe virus (NYSV) [26], scallion mosaic virus (ScaMV) [48], and turnip mosaic virus (TuMV) [47] in the TuMV phylogenetic group were used as outgroup taxa. (B) Narcissus degeneration virus (NDV). The nucleotide sequences of CP coding regions of cyrtanthus elatus virus A (CyEVA) [27], iris severe mosaic virus (ISMV) [49], onion yellow dwarf virus (OYDV) [50], and shallot yellow stripe virus (SYSV) [51] in the OYDV phylogenetic group were used as outgroup taxa. Dots in each clade show the isolates whose genomic sequences were fully sequenced. The full genomic sequences of the isolates determined in this study are listed in the tables below the phylogenetic networks of NLSYV and NDV. Acc # are also listed in the tables. The NY-CB1 isolate was found to have recombination site in CP coding sequence (see Section 3.6. Inference of Recombination).