Table 1.
Lengths and positions of homozygosity tracks shared by both affected siblings
Chrom. | From (SNP ID) | Position | To (SNP ID) | Position | Total homozygosity length (MB) | Genes in Alzene found in these regions |
---|---|---|---|---|---|---|
1 | rs1390484 | 64,603,980 | rs6681765 | 76,549,653 | 11.95 | |
1 | rs2994809 | 120,153,500 | rs661678 | 145,445,019 | 25.29 | PRKAB2 |
1 | rs2584315 | 220,273,510 | rs851170 | 221,416,553 | 1.14 | |
2 | rs13423995 | 89,769 | rs3910069 | 7,472,223 | 7.38 | |
2 | rs10189659 | 193,944,304 | rs2123738 | 195,479,306 | 1.54 | |
3 | rs1517520 | 16,482,329 | rs17006228 | 19,761,798 | 3.28 | RFTN1 |
3 | rs9863064 | 61,590,243 | rs704267 | 71,784,695 | 10.19 | |
3 | rs1546304 | 80,618,614 | rs893518 | 81,898,253 | 1.28 | |
3 | rs12630403 | 103,152,590 | rs1107889 | 116,721,177 | 13.57 | |
4 | rs7672923 | 110,173,872 | rs4975181 | 129,466,845 | 19.29 | CASP6; FABP2 |
5 | rs6870997 | 34,587,622 | rs7711836 | 55,344,388 | 20.76 | PRKAA1; HMGCS1; NDUFS4 |
5 | rs17237118 | 67,441,983 | rs7732832 | 90,645,624 | 23.20 | HMGCR; CRHBP |
6 | rs9460326 | 11,382,125 | rs13202453 | 21,091,421 | 9.71 | |
8 | rs10503942 | 33,300,800 | rs16882274 | 34,447,332 | 1.15 | |
8 | rs6470874 | 132,053,392 | rs7017860 | 135,220,187 | 3.17 | |
9 | rs10814410 | 36,587 | rs1378324 | 3,834,391 | 3.80 | VLDLR |
10 | rs10823828 | 73,129,862 | rs607483 | 78,895,276 | 5.77 | PSAP; CHST3; PPP3CB; SEC24C; NDST2; CAMK2G; PLAU; VCL; AP3M1; MYST4; KCNMA1 |
10 | rs12267798 | 106,125,107 | rs4918515 | 112,181,982 | 6.06 | SORCS3; SORCS1; hCG2039140 |
11 | rs1503502 | 19,215,941 | rs611962 | 78,319,725 | 59.10 | BDNF; CAT; MAPK81P1; TCN1; CNTF; CHRM1; GSTP1; GAL; FADD; 1NPPL1; UCP2; GAB2 |
13 | rs12430069 | 59,745,163 | rs7999738 | 61,243,897 | 1.50 | |
13 | rs1316712 | 84,627,554 | rs2148065 | 94,432,314 | 9.80 | |
14 | rs11845833 | 73,772,002 | rs17103130 | 74,844,099 | 1.07 | NPC2; DLST; FOS |
16 | rs4081759 | 65,505,284 | rs10431924 | 67,396,803 | 1.89 | HSD11B2 |
17 | rs16968682 | 34,640,425 | rs16939964 | 40,779,673 | 6.14 | GRB7; PNMT; PYY |