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. 2022 Mar 24;11:giac028. doi: 10.1093/gigascience/giac028

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© The Author(s) 2022. Published by Oxford University Press GigaScience.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 10: — Properties of cassava pan-genomes. (a) Cassava pan-genomes across different assemblies and large SVs (100 bp to 100 kb) detected by pan-genome graphs. The pan-genome size decreased when AM560 was included because there were fewer 1-to-1 orthogonal regions between AM560, TME204 H1, and H2. (b) The pan-genome of TME204 H1 and H2 improved mapping rate and mapping quality of Illumina PE reads collected from the same DNA sample. (c) SVs in cassava pan-genomes are enriched with repeats (χ² test P < 0.05), especially LTR elements (P < 0.05), and are deprived of small RNAs (P < 0.005).