Figure 4:

Reconstruction of pseudochromosomes in the cassava TME204 H1 assembly using the genetic map. For each pseudochromosome, the panel shows the physical positions on the reconstructed pseudochromosome and the map positions connecting by lines. Adjacent contigs within the reconstructed pseudochromosome are shown as boxes with alternating shades. The ρ-value under each map measures the Pearson correlation coefficient, with values in the range of −1 to 1, and values closer to −1 and 1 indicate near-perfect collinearity. Chromosome XII is composed of a single chromosomal haplotig, the same as for chromosomes IV, VIII, XIV, and XVI. Chromosome V is composed of 2 contigs, the same as for chromosomes II, III, VI, IX, X, XI, XIII, XV, XVII, and XVIII. Chromosome VII is composed of 6 haplotigs, which is the most fragmented chromosome in the TME204 H1 assembly, followed by chromosome I, which has 4 haplotigs. Plots for all chromosomes in both H1 and H2 assemblies are provided in Supplementary File S5.