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. 2022 Mar 25;15:68. doi: 10.1186/s12920-022-01218-8

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Taxonomic profiles comparing the different sampling method (lavage and swab) results of V1–9 16S rRNA MinION sequencing with 3000 randomly sampled reads after filtration. In the analytical algorithm, we assigned the bacterial name that showed the highest Minimap2 score for each read; bacteria with an assignment of less than 1% were included in “Others.”