Table 2.
Statistics of MinION sequencing data
| Sample | Pass reads | Filtered reads | ||||
|---|---|---|---|---|---|---|
| No. of reads | Min (bp) | Avg (bp) | Max (bp) | No. of reads | Avg (bp) | |
| 1_lavage_V1-9 | 115,957 | 128 | 1434.3 | 4377 | 91,449 (78.9%) | 1633.5 |
| 1_swab_V1-9 | 63,547 | 155 | 1078.0 | 4193 | 31,462 (49.5%) | 1619.3 |
| 2_lavage_V1-9 | 33,721 | 158 | 1507.2 | 4486 | 28,718 (85.2%) | 1607.0 |
| 2_swab_V1-9 | 53,584 | 145 | 1203.6 | 3746 | 33,294 (62.1%) | 1613.6 |
| 3_lavage_V1-9 | 28,071 | 154 | 1396.3 | 4875 | 20,958 (74.7%) | 1613.8 |
| 3_swab_V1-9 | 23,053 | 162 | 1521.0 | 3990 | 20,073 (87.1%) | 1614.5 |
| 4_lavage_V1-9 | 30,603 | 155 | 1502.9 | 4977 | 25,756 (84.2%) | 1639.5 |
| 4_swab_V1-9 | 37,597 | 161 | 1103.2 | 3383 | 19,588 (52.1%) | 1644.9 |
| 5_lavage_V1-9 | 15,836 | 147 | 1346.1 | 3393 | 10,688 (67.5%) | 1632.8 |
| 6_lavage_V1-9 | 38,020 | 144 | 1517.2 | 3787 | 32,255 (84.8%) | 1642.4 |
| 7_lavage_V1-9 | 61,432 | 158 | 1218.8 | 5035 | 37,018 (60.3%) | 1631.4 |
| 8_lavage_V1-9 | 52,071 | 111 | 1257.5 | 3344 | 33,906 (65.1%) | 1603.2 |
| 9_lavage_V1-9 | 119,745 | 125 | 1530.5 | 4664 | 103,212 (86.2%) | 1649.4 |
| 10_lavage_V1-9 | 102,333 | 150 | 1496.5 | 4980 | 84,028 (82.1%) | 1650.2 |
| 11_lavage_V1-9 | 61,756 | 121 | 1541.3 | 3519 | 54,116 (87.6%) | 1647.8 |
| 12_lavage_V1-9 | 101,755 | 120 | 1433.9 | 4759 | 77,756 (76.4%) | 1635.8 |
| 13_lavage_V1-9 | 71,041 | 134 | 1437.5 | 4828 | 56,601 (79.7%) | 1599.2 |
| 14_lavage_V1-9 | 42,629 | 159 | 1367.7 | 4981 | 31,447 (73.8%) | 1629.0 |
| 15_lavage_V1-9 | 52,908 | 172 | 1452.9 | 3333 | 42,910 (81.1%) | 1630.4 |
| 16_lavage_V1-9 | 52,230 | 153 | 1480.3 | 4345 | 43,549 (83.4%) | 1633.0 |
| 17_lavage_V1-9 | 38,219 | 154 | 1478.3 | 3453 | 31,757 (83.1%) | 1625.3 |
| 18_lavage_V1-9 | 28,886 | 185 | 1464.7 | 3328 | 23,816 (82.4%) | 1631.8 |
| 5_lavage_V3-4 | 74,096 | 147 | 589.5 | 3038 | 29,505 (39.8%) | 574.8 |
| 6_lavage_V3-4 | 83,983 | 141 | 586.1 | 2099 | 33,677 (40.1%) | 571.8 |
| 9_lavage_V3-4 | 49,642 | 148 | 588.2 | 2275 | 21,614 (43.5%) | 574.2 |
| 10_lavage_V3-4 | 65,561 | 139 | 587.2 | 2873 | 28,440 (43.4%) | 574.5 |
| 11_lavage_V3-4 | 98,126 | 124 | 587.4 | 2568 | 40,485 (41.3%) | 571.7 |
| 14_lavage_V3-4 | 79,631 | 127 | 584.9 | 1,849 | 35,009 (44.0%) | 571.2 |
Min minimum read length, Avg average read length, Max maximum read length. The reads were filtered by size, retaining 1300–1950 bp sequences for the V1–9 region and 350–600 bp sequences for the V3–4 region