Table 16.

Homology of predicted peptides binding to HLA alleles to viral proteins.

Allele	SjS Protein	Core Sequence	Virus	Viral Protein	Homology
HLA-DRB4*01:01	Ro52	RFLLKNLRP	Human Immunodeficiency Virus	Glycoprotein 120	100.0%
			Serratia phage 2050H2	Uncharacterized	87.5%
			Klebsiella phage 31	Endopeptidase Rz	87.5%
			Escherichia phage ECA2	Endopeptidase	87.5%
			Leclercia phage 10164RH	Uncharacterized	87.5%
			Citrobacter phage SH1	Endopeptidase	87.5%
			Citrobacter phage phiCFP-1	Uncharacterized	87.5%
			Serratia phage SALSA	Endopeptidase	87.5%
			Citrobacter phage SH2	Endopeptidase Rz	87.5%
			Klebsiella phage KPP-5	Endopeptidase	87.5%
			Leclercia phage 10164-302	Uncharacterized	87.5%
			Enterobacter phage E-2	Endopeptidase	87.5%
			Klebsiella phage NL_ZS_3	Endopeptidase Rz	87.5%
			Serratia phage SM9-3Y	I-spanin	87.5%
			Escherichia phage LL2	I-spanin	87.5%
			Salmonella phage phiSG-JL2	Gp18.5	87.5%
			Yersinia phage phiYeO3-12	Endopeptidase	87.5%
			Enterobacter phage E-4	Endopeptidase Rz	87.5%
			Enterobacter phage E-3	Endopeptidase	87.5%
			Yersinia phage phiYe-F10	Uncharacterized	87.5%
			Klebsiella phage	endopeptidase	87.5%
HLA-DRB1*01:01	Ro60	LFTFIQFKK	Botrytis virus X	RNA replication protein
100%	Ro60	TYYIKEQKL	Streptomyces phage	Ro-like RNA binding protein	88.9%
			Streptomyces phage	Ro-like RNA binding protein	88.9%
			Streptomyces phage Beuffert	Ro-like RNA binding protein	88.9%
			Pyramimonas orientalis virus	Uncharacterized protein	69.2%
		KDLLRLSHL	Botrytis virus X	RNA replication	100%
HLA-DRB1*01:01	La	DFNVIVEAL	Salmonella phage SPFM12	Uncharacterized	88.9%
HLA-DRB3*01:01	La	DLDDQTCRE	Leviviridae sp.	RNA replicase beta chain	64.3%
HLA-DRB1*01:01	M3R	IAFLTGILA	Bacillus phage 031MP004	Uncharacterized	100%
			Bacillus phage 055SW001	Uncharacterized	100%
			Bacillus phage 022DV001	Uncharacterized	100%
			Bacillus phage 031MP002	Uncharacterized	100%
			Bacillus phage 031MP003	Uncharacterized	100%
HLA- DRB1*15:01	M3R	IIGNILVIV	Human immunodeficiency virus 1	Protein Vpu	100%