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. 2022 Mar 12;14(3):585. doi: 10.3390/v14030585

Table 3.

Summary isolation and GenBank accession number information for the DNA and RNA viral disease infections.

Type Pathogen Origin Host Species Isolation ORF Region GenBank No. Year Reference
DNA virus ds DNA WSSV Mexico Penaeus vannamei Mx-F Hypothetical protein (ORF13 and ORF16) gene;
Nonfunctional hypothetical protein gene		 HQ257380 2001 [179]
Mx-H HQ257381 2004
Mx-C Nonfunctional hypothetical protein genes HQ257382 2005
Mx-G HQ257383 2004
Mx-L1 HQ257384 2001
WSSV-MX08 Complete genome KU216744 2008 [33]
Penaeus vannamei LG Partial genome MG432482 2012 [180]
JP MG432479 2011
AC1 MG432474 2011
DV1 MG432477 2011
LC1 MG432481 2011
LC10 MG432480 2011
ACF2 MG432475 2012
ACF4 MG432476 2012
GVE05 MG432478 2005
India Penaeus monodon ANI wsv285 gene KX980155 2016 [181]
WSSV-IN-07-I Unknown gene EF468499 2007 [182]
WSSV-IN-06-I EF468498 2006
WSSV-IN-05-I EU327499 2005
WSSV-IN-05-II ORF23/ORF24 region genomic sequence EU327500 2005
Penaeus vannamei IN_AP4RU Complete genome MG702567 2013 [38]
Iran Penaeus vannamei IRWSSVKH2 Hypothetical protein 75 gene KF157839 2012 [183]
IRWSSVKH4 ORF75 gene KC906268 2011
IRWSSVKH5 KF157833 2012
IRWSSVKH3 KF157832 2012
IRWSSVSIS3 KP455493 2014
IRWSSVSIS2 KF956791 2013
Penaeus indicus;
Penaeus vannamei 		IWV-MS21 ORF75 gene KX694234 2013
IWV-MS24 KX694236 2014
IWV-MS25 KX694237 2014
IWV-MS26 KX694238 2014
IWV-MS19 KX694242 2013
IWV-MS18 KX584741 2013
China Penaeus japonicus WSSV-CN Complete genome AF332093 1996 [30]
WSSV-CN01 KT995472 1994 [34]
Procambarus clarkii WSSV-CN02 Complete genome KT995470 2010 [34]
WSSV-CN-Pc KX686117 2015 [36]
Penaeus vannamei WSSV-CN03 Complete genome KT995471 2010 [34]
Marsupenaeus japonicus WSSV-CN04 Complete genome KY827813 2012 [35]
Thailand Penaeus monodon WSSV-TH Complete genome AF369029 1996 [29]
TH-96-II Nonfunctional ORF14 gene;
ORFI, ORFII, ORFIII, ORFIV, and ORFV genes;
ORF15 and ORF16 gene		 AY753327 2005 [184]
Taiwan Penaeus monodon WSSV-TW Complete genome AF440570 1994 [31]
South Korea Penaeus vannamei WSSV-KR Complete genome JX515788 2011 [32,34]
Australia Penaeus monodon WSSV-AU Complete genome MF768985 2016 [37]
USA Penaeus vannamei CN_95_DFPE Complete genome MN840357 2017 [41]
Ecuador Penaeus vannamei WSSV-EC-15098 Complete genome MH090824 2015 [39]
Brazil Penaeus vannamei WSSV-chimera Complete genome MG264599 2015 [40]
FSL39 Partial genome MF784752
ss DNA IHHNV
(Type I)		 Australia Penaeus monodon Australian Non-structural protein gene
Non-structural protein 1 gene
Capsid protein genes		 GQ475529 2008 [60]
IHHNV
(Type II)		 Thailand Penaeus monodon - Non-structural protein 2 gene
Non-structural protein 1 gene
Capsid protein genes		 AY362547 2003 [173]
IHHNV_TH AY102034 2000 [185]
Taiwan Penaeus monodon Taiwan B Non-structural protein 2 gene
Non-structural protein 1 gene;
Capsid protein genes		 AY355307 2003 [186]
Vietnam Penaeus monodon IHHNV-VN Non-structural protein 2 gene
Non-structural protein 1 gene
Capsid protein genes		 JN616415 2009 [60]
ST KC513422 2011
Penaeus monodon;
Penaeus vannamei 		KK-Lv-VIET1 Non-structural protein 1 gene MN481525 2019 [187]
Penaeus stylirostris VN2007 Complete genome KF031144 2007 [57]
India Penaeus monodon IN-07 Complete genome GQ411199 2007 [60]
IHHNV Capsid protein gene FJ169961 2007 [173]
IHHNV
(Type III)		 Vietnam Penaeus monodon KG Complete genome JX840067 2012 [57]
Taiwan Penaeus monodon Taiwan A Non-structural protein 2 gene;
Non-structural protein 1 gene; Capsid protein genes		 AY355306 2003 [186]
Taiwan C AY355308 2003
Ecuador Penaeus vannamei IHHNV Non-structural protein 2 gene;
Non-structural protein 1 gene;
Capsid protein genes		 AY362548 2003 [186]
Brazil Penaeus vannamei IHHNV_BR Partial genome KJ862253 2013 [60]
China Penaeus penicillatus IHHNV Complete genome KJ830753 - [60]
Penaeus monodon Fujian EF633688 2007 [188]
Ganyu JX258653 2009 [57]
Penaeus vannamei CSH-1 KF907320 2012
Penaeus vannamei Sheyang KF214742 2011
Hawaii Penaeus stylirostris Hawaii A Complete genome NC_002190 1990 [60]
Hawaii B AF218266 1990
Malaysia Macrobrachium rosenbergii IHHNV Non-structural protein genome HM536212 2009 [189]
Taiwan Macrobrachium rosenbergii AC-04-367 Non-structural protein 1 gene DQ057982 -
AC-05-005 DQ057983 -
Mexico Penaeus stylirostris IHHNV Non-structural protein 2 gene;
Non-structural protein 1 gene;
Capsid protein genes		 AF273215 2000 [190]
South Korea Penaeus vannamei K1 Structural protein gene HQ699073 2010 [191]
K2 HQ699074 2010
KLV-2010-01 Complete genome JN377975 2010 [58]
IHHNV(Type A) Madagascar Penaeus monodon IHHNV Non-structural protein 1 gene;
Structural protein genes;
Unnamed retrotransposon reverse transcriptase gene		 DQ228358 - [191]
Australia Penaeus monodon Au2005 Non-structural protein 2 gene;
Non-structural protein 1-like gene;
Viral capsid protein gene		 EU675312 - [188]
IHHNV
(Type B)		 Tanzania
Mozambique		 Penaeus monodon East Africa Non-structural protein 1 gene;
Structural protein genes		 AY124937 2000 [185]
RNA virus ds RNA IMNV
(PsIMNV)		 Indonesia Penaeus vannamei ID-EJ-12-1 ORF1/ORF2 and ORF1 polyprotein genes KJ636783 2012 [40,77]
ID-EJ-12-1 ORF1 polyprotein AIC34743 2012
ID-EJ-12-2 ORF1/ORF2 AIC34746 2012
ID-EJ-12-3 ORF1 polyprotein AIC34749 2012
ID-LP-12-2 AIC34750 2012
ID-BB-12 AIC34752 2012
ID-EJ-06 Structural protein ABN05324 -
ID-LP-11 Complete genome KJ636782 2011
ID-LP-11 ORF1 polyprotein AIC34741 2011
ID-LP-12-1 ORF1/ORF2 AIC34748 2012
IMNV Complete genome EF061744 - [74]
Indonesia KF836757 2013 [192]
Brazil Penaeus vannamei BZ-03 Structural protein AAT67230 - [77]
ZS2011001 Capsid protein AGF33812 2004
Brazil 01 Structural protein ADG37656 2007
Brazil 02 ADN43996 2007
IMNV-BZ-11-UAZ219 ORF1 polyprotein AIC34754 2011
IMNV Complete genome AY570982 - [74]
ss RNA YHV
(genotype 1)		 Thailand Penaeus monodon YHV1992 Complete genome FJ848673 1992 [98,101]
YHV1995 Complete genome FJ848674 1995
Chachoengsao 1998 Complete genome EU487200 1988 [98,108]
YHA-98-Ref pp1ab gene EU785033 1998 [98,114]
Thailand: Cholburi Envelope structural glycoprotein gene EF156405 1999 [108]
YHV1999 Complete genome FJ848675 [98,101]
YHV-PmA 3C-like protease gene EU977577 - [108]
Replicase polyprotein 1ab gene EU977578
RNA polymerase gene EU977579
Helicase gene EU977580
Nucleocapsid gene EU977581
Glycoprotein 116 gene EU977582
Glycoprotein 64 gene EU977583
Genomic sequence EU977584
THA-00-DRH pp1ab gene EU785032 2000 [98,114]
THA-01-D4 EU785004 2001
THA-01-D8 EU785034 2001
THA-01-D9 EU785019 2001
THA-01-D10 EU784984 2001
THA-02-D34 EU785001 2002
THA-03-D1 EU784982 2003
THA-03-D2 EU784991 2003
THA-03-D3 EU784998 2003
THA-03-DB1 EU785023 2003
THA-03-D29 EU785035 2003
THA-03-D30 EU784999 2003
THA-03-D33 EU785000 2003
Penaeus vannamei YHV ORF1b genes FJ627274 2007 [106]
Mexico Penaeus vannamei YHV 3C-like protease gene DQ978355 2000 [108]
ORF1a and ORF1b polyprotein gene DQ978356
Nonfunctional ORF1b polyprotein gene DQ978357
ORF1b polyprotein gene DQ978358
Helicase gene DQ978359
Nucleocapsid gene DQ978360
Glycoprotein 116 gene DQ978361
Glycoprotein 64 gene DQ978362
ORF4-like gene DQ978363
China Fenneropenaeus chinensis Hb2012 Replicase polyprotein 1b mRNA KF278563 2012 [98]
GAV
(genotype 2)		 Australia Penaeus monodon GAV Complete genome AF227196 - [98,101,108]
NC_010306 - [101]
AUS-97-MCMS1 pp1ab gene EU784980 1997 [98,114]
AUS-97-MCMS2 EU784989 1997
AUS-97-MCMS3 EU785038 1997
AUS-00-H2 EU785029 2000
AUS-00-HL4 EU785030 2000
AUS-00-HL5 EU785031 2000
AUS-00-HL11 EU785028 2000
AUS-96-Ref EU785026 1996
Vietnam Penaeus monodon VNT-01-H65 pp1ab gene EU785039 2001 [114]
VNT-01-H77 EU785013 2001
VNM-02-H6 EU785009 2002
VNM-02-H64 EU785008 2002
Thailand Penaeus monodon THA-03-HB3 pp1ab gene EU785024 2003 [114]
THA-03-HG EU785025 2003
THA-03-HA EU785021 2003
THA-03-HN EU785022 2003
THA-04-H20 EU784992 2004
THA-04-HK EU785027 2004
YHV
(genotype 3)		 Vietnam Penaeus monodon VNM-02-H5 pp1ab gene EU785006 2002 [98,114]
VNM-02-H258 EU784994 2002
VNM-02-H81 EU785016 2002
VNM-02-H70 EU785012 2002
VNM-01-H41 EU785040 2001
VNM-01-H42 EU785041 2001
VNM-02-H278 EU784996 2002
VNM-02-H264 EU784995 2002
VNM-02-H93 EU785020 2002
VNM-02-H93 p20 gene;
pp3 gene		 EU785042 2002 [114]
Indonesia Penaeus monodon IDN-04-H7 pp1ab gene EU785011 2004 [114]
IDN-04-H11 EU784985 2004
IDN-04-H10 EU784983 2004
IDN-04-H4 EU785002 2004 [98,114]
Malaysia Penaeus monodon MYS-03-H1 pp1ab gene EU784981 2003 [114]
MYS-03-H2 EU784990 2003
MYS-03-H3 EU784997 2003
Mozambique Penaeus monodon MOZ-04-H1 pp1ab gene EU784986 2004
YHV
(genotype 4)		 Thailand Penaeus monodon YHV type 4 ORF1b polyprotein gene EU170438 - [98,193]
gp116 gene EU123854
Indonesia Penaeus monodon IND-02-H9 pp1ab gene EU785017 2002 [98,114]
IND-02-H5 EU785005 2002
IND-02-H7 EU785010 2002
India Penaeus monodon IND-02-H9 p20 gene;
pp3 gene		 EU785043 2002 [114]
YHV
(genotype 5)		 Thailand Penaeus monodon THA-03-SG21 pp1ab gene EU784993 2003
YHV ORF1b polyprotein gene EU853170 2005 [193]
Malaysia Penaeus monodon MYS-03-H4 pp1ab gene EU785003 2003 [114]
Philippines Penaeus monodon PHL-03-H8 EU785015 2003
YHV
(genotype 6)		 Mozambique Penaeus monodon MOZ-04-H6 pp1ab gene EU785007 2004
MOZ-04-H8 EU785014 2004
MOZ-04-H9 EU785018 2004
MOZ-04-H11 EU785036 2004
MOZ-04-H12 EU785037 2004
YHV
(genotype 7)		 Australia Penaeus monodon YHV7 (13-00169-01) PCR1 ORF1b polyprotein gene KP738160 2012 [98,105]
YHV7 (13-00169-01) PCR2 KP738161
YHV7 (13-00169-02) PCR2 KP738162
YHV7 (13-00169-03) PCR2 KP738163
YHV7 (13-00169-02) PCR3 KP738164
YHV
(genotype 8)		 China Fenneropenaeus chinensis 20120706 Complete genome KX947267 2012 [101]
TSV Ecuador Penaeid shrimp EC1993a Capsid protein 2 gene FJ876460 1993 [127]
EC1993b FJ876461
EC1994 FJ876466 1994
EC2006a FJ876512 2006
EC2006b FJ876513
Columbia Penaeid shrimp CO1994a FJ876462 1994
CO1994b FJ876463
CO1994c FJ876464
CO1994d FJ876465
CO1998 FJ876477 1998
Penaeus vannamei CO-06A JN194141 2006 [138]
CO-06B JN194142
CO-06C JN194143
CO-07A JN194144 2007
CO-07B JN194145
CO-10 JN194146 2010
CO10 Complete genome JF966384 2010
USA Penaeus vannamei 94USHI Complete genome AF277675 1994 [62,132,194,195]
HI94TSV Viral coat protein 2 gene AY826054 1994 [117]
Viral coat protein 3 gene AY826055
US-TX04 Complete genome GQ502201 2004 [132]
2005-334 MT877007 2019 [119]
Penaeid shrimp US1994 Capsid protein 2 gene FJ876468 1994 [127]
US1995 FJ876469 1995
US1996 FJ876474 1996
US1998 FJ876476 1998
US2004 FJ876492 2004
US2007 FJ876517 2007
Honduras Penaeid shrimp HO1994 Capsid protein 2 gene FJ876467 1994
HO1998 FJ876475 1998
HO2003 FJ876483 2003
Mexico Penaeid shrimp MX1995a Capsid protein 2 gene FJ876470 1995 [127]
MX1995b FJ876471
MX1995c FJ876472
MX1996 FJ876473 1996
MX1998 FJ876478 1998
MX1999a FJ876479 1999
MX2000 FJ876480 2000
MX2004 FJ876493 2004
MX2005a FJ876504 2005
MX2005b FJ876505
MX2005c FJ876506
MX2006 FJ876514 2006
MX2007 FJ876521 2007
Penaeus vannamei SIN98TSV Viral coat protein 1 gene AF510515 1998 [125,195]
MX99 Coat protein gene AF277378 1999 [126,127]
Mexico 10 Capsid protein 2 gene JN194147 2010 [138]
Penaeus stylirostris MX99TSV Viral coat protein 1 gene AF510516 1999 [125,195]
SON2KTSV AF510517 2000 [131,195]
Penaeus stylirostris HI94TSV Viral coat protein 1 gene AF510518 2000 [117,125]
Taiwan Penaeus vannamei TW99 Coat protein gene AF406789 1999 [62,126,195]
Penaeus monodon Tw2KPmTSV Capsid protein precursor AY355309 2000 [126]
Metapenaeus ensis Tw2KMeTSV Capsid protein precursor AY355310 2000 [196]
Penaeus vannamei Tw02PvTSV Capsid protein precursor AY355311 2002 [127]
Penaeid shrimp TW2007 Capsid protein 2 gene FJ876520 2007
Thailand Penaeus vannamei Th03-1TSV Capsid protein 2 gene DQ000304 2003 [196]
Th03-2TSV DQ000305
ThOct03LvTSV VP1 gene AY912503 2003 [126]
ThMar04LvTSV AY912504 2004
ThJul04LvTSV AY912508
Penaeus monodon ThMar04Pm1TSV VP1 gene AY912505 2004
ThMar04Pm2TSV AY912506
Penaeus monodon
(post-larvae)		 ThMay04PmPLTSV VP1 gene AY912507 2004
Penaeus vannamei TH03-1 Capsid protein 1 gene AY755587 2003 [125,196]
TH03-2 AY755588
TH03-3 AY755589
TH03-4 AY755590
TH03-5 AY755591
TH03-7 AY755593
TH03-9 AY755595
TH04Lv Complete genome AY997025 2005 [132,197]
Macrobrachium rosenbergii TH03-6 Capsid protein 1 gene AY755592 2003 [125]
Penaeus monodon TH04Pm Capsid protein 2 gene DQ000306 2004 [196]
TH03-8 Capsid protein 1 gene AY755594 2003 [125]
Penaeid shrimp TH2003a Capsid protein 2 gene FJ876484 2003 [127]
TH2003b FJ876485
TH2004a FJ876496 2004
TH2004b FJ876497
TH2006 FJ876515 2006
Myanmar Penaeus monodon Mm03Pm Capsid protein 1 gene AY755596 2003 [125,196]
Vietnam Penaeus vannamei VN-TSV Capsid protein gene AY694136 - [198]
Belize Penaeus vannamei BZ01 Non-structural polyprotein gene;
Capsid protein precursor gene		 AY590471 2001 [62,124,132]
Penaeus vannamei 2005-175 Complete gene MT877008 2019 [119]
BLZ02TSV Viral coat protein 1 gene AY826051 2002 [117]
Viral coat protein 2 gene AY826052
Viral coat protein 3 gene AY826053
Penaeid shrimp BH2001 Capsid protein 2 gene FJ876481 2001 [127]
BH2002 FJ876482 2002
BH2004a FJ876490 2004
BH2004b FJ876491
BH2005a FJ876498 2005
BH2005b FJ876499
BH2005c FJ876500
BH2008 FJ876522 2008
Indonesia Penaeus vannamei Id03TSV Capsid protein 2 gene DQ000303 2003 [196]
Penaeus vannamei Indonesia 10 JN194148 2010 [138]
Penaeid shrimp ID2003a FJ876486 2003 [127]
ID2003b FJ876487
ID2003c FJ876488
ID2005 FJ876501 2005
ID2006 FJ876510 2006
China Penaeus vannamei ZHZC3TSV Complete genome DQ104696 2005 [132,199]
Cn03TSV Capsid protein 2 gene DQ000301 2003 [196]
Ch-1 Capsid protein 1 gene AY755597 [125,200]
Ch-2 AY755598
Ch-3 AY755599
Ch-4 AY755600
Ch-6 AY755602
Penaeus japonicus Ch-5 Capsid protein 1 gene AY755601 2003 [125]
Penaeid shrimp CH2003a Capsid protein 2 gene FJ876489 2003 [127]
CH2004 FJ876494 2004
CH2005a FJ876509 2005
CH2007 FJ876518 2007
Korea Penaeus vannamei KOR-CsPv04TSV Capsid protein 1 mRNA DQ099912 2004 [131]
KOR-ImPv05TSV DQ099913
Eritrea Penaeus monodon Er04PmTSV Capsid protein 2 gene DQ000302 2004 [196]
Penaeid shrimp ER2004 FJ876495 2004 [127]
Venezuela Penaeus vannamei VE05 Complete genome DQ212790 2005 [124]
2005-194 MT877006 2019 [119]
Penaeid shrimp VE2005a Capsid protein 2 gene FJ876502 2005 [127]
VE2005b FJ876503
Saudi Arabia Penaeid shrimp SA2007 Capsid protein 2 gene FJ876519 2007
Penaeus indicus SAPi Complete genome JX094350 2010 [118]
SA2010a Capsid protein 2 gene JQ356858
SA2010b JQ356859
SA2010c JQ356860
SA2011a JQ356861 2011
SA2011b JQ356862
SA2011c JQ356863
SA2011d JQ356864
SA2011e JQ356865
Aruba Penaeid shrimp AW2005 Capsid protein 2 gene FJ876508 2005 [127]
AW2006 FJ876511 2006
Nicaragua Penaeid shrimp NI2005 Capsid protein 2 gene FJ876507 2005
NI2006 FJ876516 2006
WTD
(MrNV)		 French West Indies Macrobrachium rosenbergii MrNV Segment RNA-1 AY222839 2003 [143,154]
Segment RNA-2 AY222840
RNA-1 NC_005094 2009 [201]
RNA-2 NC_005095 -
MrNV-Ant Putative RNA-dependent RNA-polymerase gene AY313773 2005 [141]
China MrNV RNA-directed RNA polymerase gene AAQ54758 - [202]
Chinese 1 AY231436 2006 [143,202]
Chinese 2 Segment RNA-2 FJ751225 - [143]
MrNV Segment RNA-1 RNA-dependent RNA polymerase gene;
B2 protein gene		 FJ751226 2006 [201]
Capsid protein gene AY231437 - [143]
India Nellore Capsid protein gene GU300102 - [203]
B2 protein gene GU300103 2011
MrNV Capsid protein-like gene HM565741 2010 [143]
RNA-1 RNA-dependent RNA polymerase gene;
B2 protein gene		 JQ418295 - [153]
RNA-2 capsid protein gene JQ418298 - [149,200]
Capsid protein AM114036 -
RNA-dependent RNA polymerase gene AAO60068 - [152]
RNA-directed RNA polymerase gene DQ146969 - [201]
Kakinada 1MrNV Isolate Kakinada 1MrNV capsid protein gene HQ637179 2008 [149]
Taiwan AC06-016 RNA-directed RNA polymerase gene DQ459203 - [143]
AC06-017 DQ459204
AC06-024 DQ459205
AC06-86 DQ459206
AC06-088 DQ459207
AC06-89 DQ459208
MrNV Segment RNA-1 nonfunctional polymerase gene DQ521574 - [201]
Segment RNA-2 capsid protein gene DQ521575 -
Malaysia MrNV Dependent RNA polymerase gene JN187416 2009 [143]
Australia 07-265.1 Capsid protein gene FJ379530 2007 [204]
07-265.2 A protein gene FJ379531
Australian Segment RNA 1 JN619369 2004 [143]
Segment RNA 2 JN619370
Thailand M298 Capsid protein gene EU150126 - [143]
M299 EU150127
M308 EU150128
M12 EU150129
MrNV Capsid protein mRNA DQ189990 - [201]
WTD
(XSV)		 Taiwan Macrobrachium rosenbergii XSV Nucleocapsid protein CP17 gene DQ521573 - [205]
Thailand M23 Capsid protein gene EU150133 - [204]
M309 EU150132 -
07-265.3 FJ379532 2007
India Kakinada 1XSV Isolate Kakinada 1XSV capsid protein gene HQ637180 2008 [149]
XSV Capsid protein gene JQ418299 -
Capsid protein, genomic RNA AM114037 -
Capsid protein gene NC_043494 -
Capsid protein gene AY247793 - [198]
China XSV Nucleocapsid protein CP17 and CP16 genes DQ174318 - [206]