TABLE 3.
Homology search results for DNA sequences flanking Tn5-OT182 integrations in this study
| Gene (product) | Gene size (bp) | Similar gene products (species) | Putative function | GenBank accession no. |
|---|---|---|---|---|
| waaF (WaaF) | 1,040 | Heptosyl transferase II (P. aeruginosa) | Heptosyl II transferase | U70983 |
| ADP-heptose:heptosyl transferase homolog (P. aeruginosa) | U63816 | |||
| ADP-heptose:heptosyl transferase II (Neisseria gonorrhoeae) | Z37141 | |||
| RfaF (R. solanacaerum) | X95498 | |||
| ADP-heptose–LPS heptosyltransferase II (E. coli) | AE000440 | |||
| udg (Udg) | 1,401 | UDP-glucose dehydrogenase (Xanthomonas campestris) | UDP-glucose dehydrogenase | X79772 |
| UDP-glucose dehydrogenase (Sinorhizobium meliloti) | AJ222661 | |||
| Nucleotide sugar dehydrogenase (Aquifex aeolicus) | AE000669 | |||
| UDP-glucose dehydrogenase (B. subtilis) | AF015609 | |||
| Product similar to P. aeruginosa GDP-mannose-6-dehydrogenase protein | Z92952 | |||
| waaE (WaaE) | 924 | Autotrophic growth protein homolog (Haemophilus influenzae) | ADP-heptose synthase | U32828 |
| ADP-heptose synthase (H. influenzae) | U17642 | |||
| Putative kinase (E. coli) | AE000387 | |||
| Probable LPS core synthesis (V. cholerae) | AB012957 | |||
| ADP-heptose synthase (A. aeolicus) | AE000696 | |||
| gmhD (GmhD) | 993 | ADP-l-glycero-d-mannoheptose (N. gonorrhoeae) | ADP-glyceromannoheptose epimerase | L07845 |
| ADP-l-glycero-d-mannoheptose-6-epimerase (E. coli) | X54492 | |||
| ADP-l-glycero-d-mannoheptose-6-epimerase (S. typhimurium) | U06472 | |||
| ADP-l-glycero-d-mannoheptose-6-epimerase (H. influenzae) | F64183 | |||
| ADP-l-glycero-d-mannoheptose-6-epimerase (Vibrio cholerae) | X90547 | |||
| lytB (LytB) | 941 | LytB (E. coli) | Regulator of the relA gene product | AE000113 |
| Hypothetical protein HI1007 (H. influenzae) | A64164 | |||
| LytB (H. influenzae) | U32781 | |||
| LytB (Mycobacterium tuberculosis) | AL009198 | |||
| LytB′ (M. tuberculosis) | AL021897 |