Table 2.

Comparison of the 5′- and 3′-terminal (positive-sense RNA strand) genome segment sequences of RVL strain KS14/0241 with the reference strain sequences of the other rotavirus species (as specified in Supplementary Data S1). Nucleotides present at the same position of the NCRs in all segments of RVL and consensus sequences of all rotaviruses belonging to a clade (RVA-, RVB-like) or RVC are shown in bold.

Gene Encoded by the Segment or Rotavirus Species and Clade	5′-Terminus	3′-Terminus
RVL segments
VP1	GGCACGAUGGAUGAA	UAGCACAAUAGACCC
VP2	GGCACUUAGCUUAGA	AGACUUAAUAGACCC
VP3	GGCAUAUGAUGUCGA	CAAUAGAAUAGACCC
VP4	GGCACUUAGCAAGAU	AGCUACAGUAGACCC
VP6	GGCUCGACAAGGUUA	AUAUACAAUAGACCC
VP7	GGCACAUUCAAAUUC	UUAGCAAAUAGACCC
NSP1	GGCUCAUUUAAGUUC	AAAUACACUAGACCC
NSP2	GGCUCUUCACCAUAG	ACAAAUAUUAGACCC
NSP3	GGCACAGAUAGUUAG	CUACACAUUAGACCC
NSP4	GGCACCCUUAGCAUC	AGCACAAUUAGACCC
NSP5	GGCUCAUUUGAAGAG	GGAAUGAAUAGACCC
Genome consensus
RVL	$\mathrm{GGC}\raisebox{1ex}{$\mathrm{A}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$	UAGACCC
RVB	$\mathrm{GG}\raisebox{1ex}{$\mathrm{C}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$A	AAAACCC
RVG	$\mathrm{GG}\raisebox{1ex}{$\mathrm{C}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{A}$}\right.$A	AAGACCC
RVH	$\mathrm{GG}\raisebox{1ex}{$\mathrm{A}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$A	UAUACCC
RVI	$\mathrm{GG}\raisebox{1ex}{$\mathrm{C}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$A	AAAACCC
RVJ	$\mathrm{GG}\raisebox{1ex}{$\mathrm{C}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{A}$}\right.$A	UANACCC
RVB-like clade	$\mathbf{GGN}\raisebox{1ex}{$\mathbf{A}$}\!\left/ \!\raisebox{-1ex}{$\mathbf{U}$}\right.$	ACCC
RVA	GGCU	UGUGACC
RVD	$\mathrm{GG}\raisebox{1ex}{$\mathrm{C}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.\raisebox{1ex}{$\mathrm{A}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$	UGUGACC
RVF	$\mathrm{GGC}\raisebox{1ex}{$\mathrm{A}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$	UNUGACC
RVA-like clade	$\mathbf{GGN}\raisebox{1ex}{$\mathbf{A}$}\!\left/ \!\raisebox{-1ex}{$\mathbf{U}$}\right.$	GACC
RVC	$\mathrm{GGC}\raisebox{1ex}{$\mathrm{A}$}\!\left/ \!\raisebox{-1ex}{$\mathrm{U}$}\right.$	UGUGGCU
RVC	$\mathbf{GGC}\raisebox{1ex}{$\mathbf{A}$}\!\left/ \!\raisebox{-1ex}{$\mathbf{U}$}\right.$	GGCU