Table 2.
Selection Method | Primer | Sequence | PCR Product Size | Thermocycling Conditions |
---|---|---|---|---|
K1L | TKL new | GCTACCACCGCAATAGATCCT | 897 bp for wild-type MVA; 2910 bp for rMVA-K1L |
Initial denaturation at 95° for 5 min; followed by 40 cycles at 95° for 30 s, 55° for 30 s, 72° for 4 min; and a final extension at 72° for 5 min. |
TKR new | CTAATATACCGTGTCGCTGTAAC | |||
F13L | a49 | CCTCAGTTTCAATATCTCCTTCCTG | 2539 bp for wild-type MVA; 2322 bp for MVA ΔF13L; 3095 bp for rMVA F13Lrev |
Initial denaturation at 95° for 5 min; followed by 40 cycles at 95° for 30 s, 52° for 30 s, 72° for 4 min; and a final extension at 72° for 5 min. |
a50 | GTTTTTATATGTGTTTGATCTAACGAG | |||
D4R | a58 | ACCTTCCAACTGTGGATACTCTG | 2430 bp for wild-type MVA; 2625 bp for MVA ΔD4R; 2960 bp for rMVA D4Rrev |
Initial denaturation at 95° for 5 min; followed by 40 cycles at 95° for 30 s, 52° for 30 s, 72° for 4 min; and a final extension at 72° for 5 min. |
a59 | TCGAATGAAATAAACCCTGGT |