Table 1.
Rhyzopertha dominica genome assembly metrics.
| Assembly | # Scaffolds | Total Mb | N50 1 (Mb) | L50 1 | N901 (Mb) | L90 1 | Longest Scaffold | BUSCO 2 |
|---|---|---|---|---|---|---|---|---|
| CANU | 1861 3 | 493 | 0.87 | 158 | 0.15 | 627 | 5,205,710 | 99.3 |
| Chicago/HiRise | 948 | 493 | 7.32 | 20 | 1.11 | 84 | 27,933,969 | 99.4 |
| Hybrid 4 | 336 | 479 | 7.44 | 19 | 1.48 | 74 | 27,934,817 | 97.6 |
| Hi-C/HiRise | 139 | 479 | 53.6 | 4 | 15.9 | 9 | 82,855,609 | 98.5 |
1 N50, the scaffold length such that the sum of the lengths of all scaffolds of this size or larger is equal to 50% of the total assembly length; N90, the scaffold length such that the sum of the lengths of all scaffolds of this size or larger is equal to 90% of the total assembly length; L50, the smallest number of scaffolds that make up 50% of the total assembly length; L90, the smallest number of scaffolds that make up 90% of the total assembly length. 2 [47], Insecta dataset. 3 Canu produces only contigs so the statistics for it reflect only contigs, not scaffolds. 4 Hybrid assembly with Dovetail Chicago scaffolds and MiSeq data in SeqManNGen (DNAStar Lasergene, Madison, WI, USA).